Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00794 ATGCTCTGCTTCCTGTGTACCTTGTTGTTGCCGGCGATGACCGGGGACCGATGTCACCCATTGAAGGACATGGCGGAGGGAGGGGATGCCGCCGCCATGGGGAGGCCCTATGGGTCTGACTTTGTGACGGAAATTACTCGTGACTCTGCTGTACGTACAATTGATTACTTGTCCCAGGCTAGGAAAGCGCTCAGCGAGCGTTCCCCATTTGATGTTGCTGAAGAAACTTCGACTTCTGCTGTGCTTACTCTGCCCAGTGGGTTGGCTGGTCTGCTGAACCGACAGACTGATAACAGGAGACGTCCTAAGAAGTCCCATTCTGGTGGACATAAGAGGAAATCTTCTGCCAGGGCTAATCAGAAGAAGCCTGATGATTCTAACATTTGGATTGAGACTGAGGAGTACTTTAGGGACTTAACCTTGGCTGATATTGACACCTTGTTTGAGTTCTCTCGGGCAACTAGTTTAGCTTCTCAGAAATTGGGAAATGGTCCAAGTTACAATGCAGTTACTAGTTATATCAAGAATGAAATGGAAGGATTCAATGGAGGAGTCAGTAGTGAGGATGAAAAGAAGGGTGACTTAGTGGGTAGTGAGGATGCAAAGAAGGTTGATGAAGCTGTGGAAAATGAGGATGAATTGTTGGTAATTAAGGCAATTGACGAAGCTGCTGATGAACAAGCTTGTCCTCAGGATGACAAGAATCAAGACATTTCTGATTCTGCTATTAGTTTAGAGTGGTTTTTAGGTTGTAGGAATAAACTTTCTTTGACTTCTGACCGCCCCTCTAAGAAAAGGAGGCTTTTGGGTGTTGAAGCTGGTTTGGAGAAAGTTATAATGACTTGTCCTTGTGATGAGGGTCAACTGTTTTGCCATTATTGTGGAAGGGGAGACACTGGCAGGGACTCCAATAGGTTAATTGTCTGTACTTCTTGTAAAATGGCAGTTCACTGTAAGTGCTATGGTGTGCTTGATGATGTAAATGAGACTTGGCTGTGCTCCTGGTGCAAGCAAATGGGTGATGTTGATGAATCAGTGAATCCTTGTGTTCTTTGTCCAAAGAAGGGTGGTGCATTAAAACCAGTTAATAGCAGTGTGGAAGGTGCTGGTTCTGCCCCATTTGTGCACTTATTTTGCTCTCTGTGGATGCCTGAGGTTTATGTAGATGATTTGACGAAGATGGAACCTGTTATGAATGTGGGGGAAATCAAGGAAACCCGGAAGAAATTAGTGTGTAGTGTTTGCAAAGCAAAGTGTGGTGCATGTGTTCGGTGCAGCCATGGAAGCTGCAGAACTTCTTTCCACCCTTTATGTGCAAGGGAAGCTAGACATAGGATGGAAGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATCTACCCGAGAGTAGAAGCATCTTGCCACAGGAAGGCTTTATTGAGGTTAGAAATGAATTTTCTGAAGCCAATGACCTTCCAGTGACATTGCCAGTGAGTGGTGAACACAACTTGCGAGATTGCAGGAATGGAGGATTAGTATCTGACAGTAATCCAGACAAATTGAACCATAATGACGAACCACCAGATGGAGGATTACCTGATTTCAGGTTAAGTGCTCACATGTTGGGATGTGGTGCTCTGCCTCAACAAAATGTTGAAGTGGTAGGGAGAGGGAATGAGAATGTTGATGCTTCTGATTCTCTCAGCTTTGCTCTAGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTAACGTAAAAGACGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACAAATGAAGCTTATATGGCCCCTGACGTCCGACACAAAATAGTGAATTGGCTAAAGGGCCATGTATATACCAGTGCATTTCAGAAGGGTTTAAAGGTCAAATTCAAACCAGCCAATGCATCCAAAATTGACATTGGAGCTCCCGATGGCTCTGATATTTTACCAATATCAGACTCGGGTTTGCTGGATCCTGTTGCTGTTAAGTCAGTTCCACCAAGGAGGAGAACAACCAATAACATTAGGATTTTGAAGGATAATAAAGGGATATGTCCATCTGAGGGGGTTACAAGTGAGAATGGGATGCCGGTGCACATGTGCAGAGTAGGTCAGTCCAACTGTGAGAATCCAACAAGTTCTAATGAAGCGTCCATCCCCGATGTAACTGAAATGAACTTACCCAAGTCTGAGGATATTTTTCATGAAGTTCAAGGGAATGCTGATAAACCTCACAAATCCTGCTTATCTGGAAAGGGTGCAGTCTCTAGTTACATTCGTCCATTCATCAACAAGAAATTGCTGCAGATTGGGGTGCCTTTGGAGGATGTTATATGTTCAAGTGACAGGAGAAATTCGGGTTTGGTTGAATCCTTTGGGGCTAGTGGCTGCTCAAATAGCCAAAATCAGAATTTAACTTGCAGTGAAATATCAAAGCCTGACGACGCAGTAAAGAAAGAGCAATTGGTTAGAAGTAAAGAAGTGGAACTTTCGGAATTTTCTCTGCAAGATGAATTGGAAGGGGAACTTATTTATTTTCAGTATAGGTTATTGCAGAATGTGGTGGCAAAAAGGAGGCATATTGATAATTTAATCTACAGTGTTGCCAAGAGTTTACCTCATGAGATTGATAAGGCACATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAGGGCAGAAAAGAAAGAAAGCACAAGGAAGCACAGGCAGTATTGGCTGCTGCAACTGCTGCTGCGGCAGCATCTTCTAGGTCATTCCGGAAAGACACCTTAGATGAATCTATGCAACAGGAGAATTTGTTAAAATCGGACAATTTAAATGGAAGGATGGGTGCTTGTTCTCAACCAATGCCTCGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACTAGAACTTCATCAGAGAAATATTCAGATTTTTGCATGCCAACCTCAGATTTTTCTAAGGAGCAATTTAAATCATGTGATATTTGTAGACGGTCAGAGACTATTTTAAACCCTATCCTAGTCTGCTCTGGTTGCAAGGTTTCAGTTCACTTAGATTGCTATCGTAGTGTGAAAGAAACAACAGGTCCGTGGTACTGTGAGTTATGTGAAGAAATGTCATCTAGAAGCTCTGGGGCATCTGCTATCAACTTTTGGGAGAAACCTTATATTGGTGTAGAGTGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGATTCATGCTTTCTGTGCCGAGTGGGTTTTTGAGTCTACGTTCAGAAGAGGACAAATAGATGCCATTGAAGGAATGGAAAGTGTGCCAAAAGGAGTTGACATTTGTTGCATCTGCCATTGCAAGAATGGTGTATGCATGAAGTGTTGCTATGGGCATTGTCAGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATGCGAGGACTGCTGGTGGTAAGGTTCAACACAAAGCTTACTGTGAAAAGCATAGTTTGGAGCAAAAAGCAAAGGCTGAAAATCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTGAGACTTCCTTTCCCTTTTCTTAACCAGCTTCCTCATTATTATTTGCAGGACTTGAAAATAGGATGCATTGTCCTTTGCAATGTTGTGAAACTCGGAAGAGGATCGGAAAGGGAATGA 3738 0.4283 MLCFLCTLLLPAMTGDRCHPLKDMAEGGDAAAMGRPYGSDFVTEITRDSAVRTIDYLSQARKALSERSPFDVAEETSTSAVLTLPSGLAGLLNRQTDNRRRPKKSHSGGHKRKSSARANQKKPDDSNIWIETEEYFRDLTLADIDTLFEFSRATSLASQKLGNGPSYNAVTSYIKNEMEGFNGGVSSEDEKKGDLVGSEDAKKVDEAVENEDELLVIKAIDEAADEQACPQDDKNQDISDSAISLEWFLGCRNKLSLTSDRPSKKRRLLGVEAGLEKVIMTCPCDEGQLFCHYCGRGDTGRDSNRLIVCTSCKMAVHCKCYGVLDDVNETWLCSWCKQMGDVDESVNPCVLCPKKGGALKPVNSSVEGAGSAPFVHLFCSLWMPEVYVDDLTKMEPVMNVGEIKETRKKLVCSVCKAKCGACVRCSHGSCRTSFHPLCAREARHRMEVWAKYGNDNVELRAFCLKHSDLPESRSILPQEGFIEVRNEFSEANDLPVTLPVSGEHNLRDCRNGGLVSDSNPDKLNHNDEPPDGGLPDFRLSAHMLGCGALPQQNVEVVGRGNENVDASDSLSFALVLKKLIDRGKVNVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKGHVYTSAFQKGLKVKFKPANASKIDIGAPDGSDILPISDSGLLDPVAVKSVPPRRRTTNNIRILKDNKGICPSEGVTSENGMPVHMCRVGQSNCENPTSSNEASIPDVTEMNLPKSEDIFHEVQGNADKPHKSCLSGKGAVSSYIRPFINKKLLQIGVPLEDVICSSDRRNSGLVESFGASGCSNSQNQNLTCSEISKPDDAVKKEQLVRSKEVELSEFSLQDELEGELIYFQYRLLQNVVAKRRHIDNLIYSVAKSLPHEIDKAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASSRSFRKDTLDESMQQENLLKSDNLNGRMGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPTSDFSKEQFKSCDICRRSETILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEEMSSRSSGASAINFWEKPYIGVECALCGGTTGAFRKSSDGQWIHAFCAEWVFESTFRRGQIDAIEGMESVPKGVDICCICHCKNGVCMKCCYGHCQTTFHPSCARSAGLYMNARTAGGKVQHKAYCEKHSLEQKAKAENQKHGIEELKSIRQIRVRLPFPFLNQLPHYYLQDLKIGCIVLCNVVKLGRGSERE* 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00794 1245 SUPERFAMILY FYVE/PHD zinc finger 280 337 IPR011011 -
Phac9g00794 1245 Coils Coil 902 922 - -
Phac9g00794 1245 ProSiteProfiles Zinc finger PHD-type profile. 1005 1054 IPR019787 -
Phac9g00794 1245 ProSitePatterns Zinc finger PHD-type signature. 1008 1051 IPR019786 -
Phac9g00794 1245 ProSiteProfiles Extended PHD (ePHD) domain profile. 346 467 IPR034732 -
Phac9g00794 1245 SUPERFAMILY FYVE/PHD zinc finger 1001 1053 IPR011011 -
Phac9g00794 1245 Pfam PHD-finger 304 337 - -
Phac9g00794 1245 Pfam PHD-finger 1019 1052 - -
Phac9g00794 1245 ProSiteProfiles Extended PHD (ePHD) domain profile. 1073 1182 IPR034732 -
Phac9g00794 1245 MobiDBLite consensus disorder prediction 91 125 - -
Phac9g00794 1245 MobiDBLite consensus disorder prediction 509 534 - -
Phac9g00794 1245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 469 IPR013083 -
Phac9g00794 1245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1072 1183 IPR013083 -
Phac9g00794 1245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 341 IPR013083 -
Phac9g00794 1245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 997 1058 IPR013083 -
Phac9g00794 1245 PANTHER PHD FINGER PROTEINS 103 938 - -
Phac9g00794 1245 Pfam PHD-zinc-finger like domain 348 466 - -
Phac9g00794 1245 Pfam PHD-zinc-finger like domain 1074 1181 - -
Phac9g00794 1245 CDD ePHD 1076 1181 - -
Phac9g00794 1245 MobiDBLite consensus disorder prediction 99 117 - -
Phac9g00794 1245 SMART PHD_3 411 467 IPR001965 -
Phac9g00794 1245 SMART PHD_3 290 337 IPR001965 -
Phac9g00794 1245 SMART PHD_3 1007 1052 IPR001965 -
Phac9g00794 1245 SMART PHD_3 1128 1182 IPR001965 -
Phac9g00794 1245 ProSiteProfiles Zinc finger PHD-type profile. 288 339 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00794 Phac-Chr9 5861628 5876447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00794 285 473 C2H2 Transcription Factor Family AT3G14740 29.688 9.24e-17 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac9g00794 zf-HC5HC2H_2 1.3e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00794 - - vum:124846061 2125.9