Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00667 ATGGCGCTTCTGCGTGTTGTGTGCTTAACTTCTGCAAATCATTTATCCCCTCAAACCTCTTCCCATTCCATCTCTTTGTCTTCCATTTCCCAATCCATCAACTTCCCCAATCACTCTTCCTTTCGCCTTCCACGCTTATCCCTTTCCACAACCAAACAAACCCCAAATTTCACTCTCACATGCGTTTCCACTTCCGAACAACAAGCCCAGCCAGTTACAGAAGAAGAATTTTCTCGCACAAGGTTGCTCGCTCAGAACGTGCCCTGGACAAGCACCCCAGAGGATATTCGTTCTTTGTTTGAAAAACATGGAAAAGTCCTTGACGTCGAGCTTTCTATGTATAAGAAAGACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGGTCCCCAGAAGAGGCTCTCGAAGCTCTCAATAAACTCGAATCGTATGAGTTTGAGGGTCGTGTAATGAGAGTCAATTATGCTCGCCCGAAAAAGAAGAAAACGCCGCCTCCGGTGAAACCAAATTCTGGGGTGACCTTTAACTTGTTTGTTGGTAACTTGTCCTATGAAGCCAAGTCCACGGATCTCAAGGAGTTTTTTGATTCCGGAACTGGTAAAGTTGTTAGAGCTGAGGTTGTATATCATGAAAGTCCTAGAAAGCCGTCAGGTTATGGATTTGTGTCGTTCAAGTCCAAGAAAGAAGCTGAGGCTGCTCTTTCCGAGTTCCAAGGAAAGGATTTTATGGGAAGGTCAATCAGGGTGGATCGGGGTCGGCGGTTTGTTCAAAAACCAGGGGACAGGAATCCAAAGTCTGTAAATACTCCTTCTGATTTGAGTGTGAATGGGGCAGAAGCTCAACAGCCAGCAGAGGGGACTCCAAACTCTGAAGATACTCCTGAGTTGAGTGTGAATGGGACAGAAGCTGACAAGGCTGATTGA 921 0.4625 MALLRVVCLTSANHLSPQTSSHSISLSSISQSINFPNHSSFRLPRLSLSTTKQTPNFTLTCVSTSEQQAQPVTEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLDVELSMYKKDRNRGLAFVEMGSPEEALEALNKLESYEFEGRVMRVNYARPKKKKTPPPVKPNSGVTFNLFVGNLSYEAKSTDLKEFFDSGTGKVVRAEVVYHESPRKPSGYGFVSFKSKKEAEAALSEFQGKDFMGRSIRVDRGRRFVQKPGDRNPKSVNTPSDLSVNGAEAQQPAEGTPNSEDTPELSVNGTEADKAD* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00667 306 Gene3D - 60 160 IPR012677 -
Phac9g00667 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Phac9g00667 306 SUPERFAMILY RNA-binding domain, RBD 173 259 IPR035979 GO:0003676
Phac9g00667 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 247 IPR000504 GO:0003723
Phac9g00667 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 150 IPR000504 GO:0003723
Phac9g00667 306 CDD RRM_SF 86 153 - -
Phac9g00667 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723
Phac9g00667 306 SUPERFAMILY RNA-binding domain, RBD 65 166 IPR035979 GO:0003676
Phac9g00667 306 MobiDBLite consensus disorder prediction 251 306 - -
Phac9g00667 306 CDD RRM_SF 176 249 - -
Phac9g00667 306 PANTHER OS02G0815200 PROTEIN 27 250 - -
Phac9g00667 306 Gene3D - 161 265 IPR012677 -
Phac9g00667 306 SMART rrm1_1 81 153 IPR000504 GO:0003723
Phac9g00667 306 SMART rrm1_1 175 249 IPR000504 GO:0003723
Phac9g00667 306 MobiDBLite consensus disorder prediction 261 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00667 Phac-Chr9 4503251 4505641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00667 80 256 Eukaryotic Initiation Factors Gene Family AT3G16380 30.052 5.29e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00667 - - gmx:100790439 428.713