LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g00596	ATGTTTGCAGTTACACCATATTCTCCGGCGACCACGCCGGTTGACGTCATCCCTCCGCCGTTTCCGCAACCAGCACTGCCCCCATTCCATTCCCCGCCGTCACCATCGATAATTCTGACGCCTCCAGCCCCGTCCTCGCCGTCGCCGGAAACTTTATTCTTCCAAGGTTTTCCGCCACCGCCATCTTCAGTTACGCCTATTCCTCTGACGGTGCCGTTGTTGCCGTCTCCGTCACCAGAATCTCTCACACCGCCATTTCCGCCGTTCGAAGTTTCACAATCGCCTCCGGCTCCGACCGCCGCATCCCAGCCACCGCCGTTTCCTTATGCCACAGCGCCTTCAACGACGTCGTTTCCGCCGTTTGCAGTTGCGCCATCGCCTCCGTCTCCGACCGCCAATTTTCCACCTGCATTGCCAGATATGCCTCTGGCACCGGAAGCGGTGACGACGTCGACTGTTCCTCCACCGCCTTTACCTCCTTCGTTCACGACGGAACCAACCTTGGCAACGCCGTGGAGCCCCGCGTTGCCGTTATCGGCGCCGGAAGTAAATTTGCCGGTGGCTGTGGATTTTCGGAAGGCGTCAACATTCCACGTGTCAAGTGGGCTCATTTTTGGGCTTTTAATTGGAGCAATCGTTTTGGTGTTTGTTTTTAGTATTGGATTAGTTCTATGCAGGAATAGGAAGAAAAACAAACAGAAGAATCTATGCACGCGTCGCTCTAAGGAATCACCACCGTCCGTTGAATCCAAGGGATCTCATGTTATTAACGTGCCATCAAATCCAACGCTGCCACCTCATCCCACGTCAGGTTCTTTTAATTCAGTGTCTGTGAAAGCAATTCCAAACCATGCTCCAAGGGCAGCCTTCGGTCCCGGGAATGATACTTTCACGTATGATGAAATATTGGTGGCCACTAGTTGTTTCTCTGAGTCCAACCTTCTTGGAGAAGGTGGCTTTGGCTATGTGTACAAAGGAGTTCTCCCGTGTGGAAAGCAAATTGCGGTTAAGCAGCTAAAATCAGGAAGCCAACAAGGAGAGAGAGAATTTCAAGCTGAGGTTGAGACAATTAGCCGAGTGCATCATAAGCATCTTGTTGAATTGGTTGGCTACTGTGTTATTGGAGCAGAGAGAATGCTTGTTTATGAATTTGTTCCCAATAACACATTGGAATTTCACTTGCATGGGGAGGGAAATATCTTCTTAGGATGGACAACGAGAATTAAAATTGCCCTCGGATCTGCAAAAGGGCTGGCATATCTACATGAAGATTGTAATCCAGCAATTATTCACCGTGATATTAAAGCATCTAATATTCTTCTTGATTTTAAGTTTGAACCCAAGGTTTCTGACTTTGGCCTGGCAAAAATCTTACCAAACACCGATAGTCACCTTACCACCCGAGTGATGGGAACCTTTGGATATCTGGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGACGTATATTCCTACGGCATCATGCTTTTAGAACTTATAACCGGACGTCCACCAATCACTGCATCAGGATCAGGGAATGAGAGCTTGGTTGACTGGGCTAGACCATTGCTTTCTCGAGCACTACAAGATGATAACTTCGACCTTGTTGATCCAAGGTTGCAGAAAAATTACGATGCTGATGGGATGGTTAGAATGATTACATGTGCAGCTGCTTGTGTGCGCCAGTCATCCGCCCTTCGACCTCGTATGAGCCAAATTGTTGGAGTCTTAGAAGGAGTGGTTTCTCTTTCTGATCTTGTTGGAGATGTTACACCGGGACATACCACAGTACACAATTGGTCAAATTATTTAGATTATGGTGCCAACCAAGACCAGAAGGACTTCAGAAGTTTCGATTTGGCATTATCATCTCAGAAATACAGCTCCAGTGGGTACATTGAAACAACTAGTGCTTGTGGCCTTTACTCATCAGGCTCAGGTAGTGAGGCTCACCAATCATTTCGAGACATAATATAA	1986	0.4778	MFAVTPYSPATTPVDVIPPPFPQPALPPFHSPPSPSIILTPPAPSSPSPETLFFQGFPPPPSSVTPIPLTVPLLPSPSPESLTPPFPPFEVSQSPPAPTAASQPPPFPYATAPSTTSFPPFAVAPSPPSPTANFPPALPDMPLAPEAVTTSTVPPPPLPPSFTTEPTLATPWSPALPLSAPEVNLPVAVDFRKASTFHVSSGLIFGLLIGAIVLVFVFSIGLVLCRNRKKNKQKNLCTRRSKESPPSVESKGSHVINVPSNPTLPPHPTSGSFNSVSVKAIPNHAPRAAFGPGNDTFTYDEILVATSCFSESNLLGEGGFGYVYKGVLPCGKQIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVELVGYCVIGAERMLVYEFVPNNTLEFHLHGEGNIFLGWTTRIKIALGSAKGLAYLHEDCNPAIIHRDIKASNILLDFKFEPKVSDFGLAKILPNTDSHLTTRVMGTFGYLAPEYASSGKLTDKSDVYSYGIMLLELITGRPPITASGSGNESLVDWARPLLSRALQDDNFDLVDPRLQKNYDADGMVRMITCAAACVRQSSALRPRMSQIVGVLEGVVSLSDLVGDVTPGHTTVHNWSNYLDYGANQDQKDFRSFDLALSSQKYSSSGYIETTSACGLYSSGSGSEAHQSFRDII*	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g00596	661	MobiDBLite	consensus disorder prediction	240	260	-	-
	Phac9g00596	661	Pfam	Protein kinase domain	310	516	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac9g00596	661	MobiDBLite	consensus disorder prediction	234	269	-	-
	Phac9g00596	661	Gene3D	Transferase(Phosphotransferase) domain 1	385	589	-	-
	Phac9g00596	661	MobiDBLite	consensus disorder prediction	120	142	-	-
	Phac9g00596	661	ProSiteProfiles	Protein kinase domain profile.	309	584	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac9g00596	661	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	213	610	IPR047117	-
	Phac9g00596	661	MobiDBLite	consensus disorder prediction	25	167	-	-
	Phac9g00596	661	SUPERFAMILY	Protein kinase-like (PK-like)	291	580	IPR011009	-
	Phac9g00596	661	FunFam	proline-rich receptor-like protein kinase PERK8	385	595	-	-
	Phac9g00596	661	FunFam	Proline-rich receptor-like protein kinase PERK8	282	384	-	-
	Phac9g00596	661	Gene3D	Phosphorylase Kinase; domain 1	275	384	-	-
	Phac9g00596	661	MobiDBLite	consensus disorder prediction	149	164	-	-
	Phac9g00596	661	ProSitePatterns	Protein kinases ATP-binding region signature.	315	337	IPR017441	GO:0005524
	Phac9g00596	661	CDD	STKc_IRAK	315	582	-	-
	Phac9g00596	661	SMART	serkin_6	309	543	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac9g00596	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	429	441	IPR008271	GO:0004672\|GO:0006468
	Phac9g00596	661	MobiDBLite	consensus disorder prediction	25	113	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g00596	Phac-Chr9	3923095	3927951	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g00596	203	640	Trihelix Transcription Factor Family	AT5G38560	49.556	2.26e-138	419

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Phac9g00596		Pkinase	1.9e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g00596	-		-	vum:124823967	947.962