Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00540 ATGCAACAGAGGCTGAAGTTGCAGCAACAACAAGCCCTCATGCAGCAAGCTTTGCTTCAGCAGCAACAGATGTACCACCCTGGCATGCTCGCCGCAGCTATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATTTGCCTCCTGGTTTTGATACATCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACTGATAAACTTCTCGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTATCACGATCGAGCATCTGCGGCCCTTGCAATAATGACATTGCATGGACGACAACTTTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGACACATCAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACCGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGCGATCATCAGGATGCCCAGAGTGCCATAAATGATATGACAGGTAAGTGGTTGGGAAACAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTACCAGCTCCAGTGAAGAAAAGAGCAATGACAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAATAATGAGGATGCTCCTGAAAACAATTCTTTATACACCACAGTTTATGTTGGCAACCTTCCTCATGATGTAACTCAAGCTGAACTCCATTGCCAATTCCATGCACTGGGGGCTGGGGTAATTGAGGAGGTTCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTCAGATACAACACTCACGAGGAAGCTGCGTTGGCCATTCAGGTGGCTAATGGAAGAATAATCCGTGGGAAGAGTATGAAGTGTTCATGGGGTAGTAAACCAACTCCTCCTGGAACAGCTTCGAATCCGTTACCTCCTCCTGCTCAACCGTATCAAATACTTCCGACTGCAGGGATGAACCAAGGTTATTCTCCTGCTGAATTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCAGGTCAAGCTCTTCTGCAAATGACTGGACAACATGGCCTAGCTCCTGCTTCAATGGGCGTAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACCGGTAATTCATCAAGACAGCAGCTTATGTACTATCGTTGA 1305 0.4544 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGTSSSEEKSNDNQNAVVLTNGSSDGGQDNNNEDAPENNSLYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQVANGRIIRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGVNSGGSQAMYDGYTGNSSRQQLMYYR* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00540 434 FunFam Nucleolysin TIAR-like protein 1 138 - -
Phac9g00540 434 Gene3D - 240 340 IPR012677 -
Phac9g00540 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Phac9g00540 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Phac9g00540 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Phac9g00540 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 329 IPR000504 GO:0003723
Phac9g00540 434 SUPERFAMILY RNA-binding domain, RBD 255 345 IPR035979 GO:0003676
Phac9g00540 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Phac9g00540 434 SUPERFAMILY RNA-binding domain, RBD 134 245 IPR035979 GO:0003676
Phac9g00540 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Phac9g00540 434 Gene3D - 138 239 IPR012677 -
Phac9g00540 434 Gene3D - 1 137 IPR012677 -
Phac9g00540 434 SMART rrm1_1 141 214 IPR000504 GO:0003723
Phac9g00540 434 SMART rrm1_1 56 125 IPR000504 GO:0003723
Phac9g00540 434 SMART rrm1_1 263 332 IPR000504 GO:0003723
Phac9g00540 434 FunFam Oligouridylate-binding protein 1C 239 340 - -
Phac9g00540 434 CDD RRM2_PUB1 139 218 - -
Phac9g00540 434 MobiDBLite consensus disorder prediction 218 258 - -
Phac9g00540 434 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 44 339 - -
Phac9g00540 434 SUPERFAMILY RNA-binding domain, RBD 40 133 IPR035979 GO:0003676
Phac9g00540 434 FunFam Nucleolysin TIAR-like protein 139 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00540 Phac-Chr9 3525549 3533422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00540 47 336 Eukaryotic Initiation Factors Gene Family AT1G49760 27.483 5.68e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00540 K13201 - gmx:100777108 825.854