Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00519 ATGGATGAATATTCTGGTAAAAGAGTTATTGATGGGATGGTAGTCCCTCGAAAGGGGGTCGGCCATGTGTTTAGAGACACTGCCAATGCTAAAGATCGAAATGGTCAGGTGTGCAGCCGCCTTACTTGCAGTAGCAGAGTCAACACCTTTAAAGGTGCTCAAAATGGTTCTTCTGAAAAAGGAAAATCTTTGAAACCTTCTATCCAATCTTCTTCCGCTGGAAAGGAAGCAGTTGGAAGCTCCTCTAGAACTTTTTCCAAGACTAGTAGCCCTGGAAAACCGCTTATAAAGCCTCGGAAAAAATCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTGCAGGATGAATCAGAAGTTTCAAAACTCGCCCCTCCCCCTGAAAAAAGCCAGACAGGGCTTCAAGCTGAAATGGAAAGTACAGTGTCTGGTACTGTCATGATGGAAGTAGGAAGCTCAACTGTAGTATCCAATTCAAGATCTCGGAGGAATTTTCATCCAAAGCCTGGAATTAGCGGTCAGGAAATTAAAAACACTGGTCCAGTGATGCGTGCTGGTACCAGTAGGTATGGACTGAGGAACCTCAAATGCAACTCTATTTCTGATGTCCTCCCTGCCGGCTGTTCGCCTTCAGATTCAACCCTTAACAGAAGGAAGGATATGATAAAAAAGAGGAATTGTGAAGGGGAAGGTAGTTCCTCTGCTAGAGGGAAGAAAATGAGTGGGTCTTCATTAGAAGGGCGGAATTCTGGTTCCAGAAATGGCATATCTATTTCTGATTCAAGAATATCTAGGAATGCTCCTCCTCACAGGGACAGGTCTGACAGCAACATGGCACCAGTTAGAACTCGGAAATCAATTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGCAAATCCCGTGTCACCCAATCAGTCCCCTGTCACGATACCTTCTTTGCCTCATTCTGGTGGTCGTAATGCTCCTGGTGTATCACATCGTACTTCTGTAGATAGTTCCTTAAGTTGTCCAAGCTCTCATAGTAGACCGGGTACTGGCAGTGAGGAGTTATATGGTGTTATGCCTGGATCTCCTTCAGAATATGGCCTCACTCATTCTATAATGAATCTGGATAGCTTTCGACGGCGTTACAACGTGGATAGTATTGCTGAGGTATTGTTGGCACTTGAGAGGATTGAACACGATGTTGAGCTAACACATGAGCAAATTCGTTTACTAGAATCCAACTTGTTCCTTACTGGGCTTAACTTCTACGATCCACACAGAGACATGCGATTGGACATTGATAACATGTCTTATGAGCAACTGCTGGCTCTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCGCTATCAGACTGCCTAAAGAAAAGTTTCTTCCAGTCCTCACCCTCTGAAACTGCAGTTGACAGTTGCAATGAAGCCAAGGATGATACCAAATGCAGCATTTGCCAGGAGGAATATGTGGTTGAGGATGAATTGGGGAGTTTGCATTGCGAGCACATGTATCATGTGGTTTGCATCCAGCAGTGGCTTCGGCTGAAGAACTGGTGCCCAATTTGCAAAGCATCAGTGGGACTGTCAAATTCATCCCCATCTCAATGA 1632 0.4504 MDEYSGKRVIDGMVVPRKGVGHVFRDTANAKDRNGQVCSRLTCSSRVNTFKGAQNGSSEKGKSLKPSIQSSSAGKEAVGSSSRTFSKTSSPGKPLIKPRKKSSSQLETDSSETSSVQDESEVSKLAPPPEKSQTGLQAEMESTVSGTVMMEVGSSTVVSNSRSRRNFHPKPGISGQEIKNTGPVMRAGTSRYGLRNLKCNSISDVLPAGCSPSDSTLNRRKDMIKKRNCEGEGSSSARGKKMSGSSLEGRNSGSRNGISISDSRISRNAPPHRDRSDSNMAPVRTRKSISGHARGRLSSQGNANPVSPNQSPVTIPSLPHSGGRNAPGVSHRTSVDSSLSCPSSHSRPGTGSEELYGVMPGSPSEYGLTHSIMNLDSFRRRYNVDSIAEVLLALERIEHDVELTHEQIRLLESNLFLTGLNFYDPHRDMRLDIDNMSYEQLLALEERMGSVSTALTEEALSDCLKKSFFQSSPSETAVDSCNEAKDDTKCSICQEEYVVEDELGSLHCEHMYHVVCIQQWLRLKNWCPICKASVGLSNSSPSQ* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00519 543 ProSiteProfiles Zinc finger RING-type profile. 490 531 IPR001841 -
Phac9g00519 543 MobiDBLite consensus disorder prediction 218 234 - -
Phac9g00519 543 MobiDBLite consensus disorder prediction 203 358 - -
Phac9g00519 543 Pfam Ring finger domain 489 531 IPR001841 -
Phac9g00519 543 FunFam E3 ubiquitin-protein ligase arkadia 452 536 - -
Phac9g00519 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 74 534 IPR045191 GO:0061630
Phac9g00519 543 MobiDBLite consensus disorder prediction 327 350 - -
Phac9g00519 543 Coils Coil 394 414 - -
Phac9g00519 543 MobiDBLite consensus disorder prediction 49 91 - -
Phac9g00519 543 MobiDBLite consensus disorder prediction 292 318 - -
Phac9g00519 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 535 IPR013083 -
Phac9g00519 543 MobiDBLite consensus disorder prediction 107 121 - -
Phac9g00519 543 SUPERFAMILY RING/U-box 484 536 - -
Phac9g00519 543 MobiDBLite consensus disorder prediction 49 140 - -
Phac9g00519 543 MobiDBLite consensus disorder prediction 155 186 - -
Phac9g00519 543 SMART ring_2 490 530 IPR001841 -
Phac9g00519 543 MobiDBLite consensus disorder prediction 238 266 - -
Phac9g00519 543 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00519 Phac-Chr9 3391388 3396092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00519 376 531 C3H Transcription Factor Family AT2G15530 42.675 1.03e-31 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00519 - - gmx:100787213 915.605