Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00476 ATGGGAGTGGTGGCAGTATTGCCCTCTGAGTCTCTGCAGCTTGACTGCAAGGACACGAAGCATGTGACTGAGAAAGATGTGTGTAATCATCTACCATCAAATGAAGAGCACATACTTGGAGAAGAATCAAGTCAAAATATCAATAATTTGCGTGAGAGAGGATATATGGAATATGGATGTCAACATTACCGTAGAAGATGCCGTATTAGGGCCCCCTGTTGCAATGAGATTTTTAATTGCCGCCATTGTCACAATGAAGCAAAAAATAATATCAACATTGATCAGAAGCACAGACACGATGTTCCCCGCCATCAAGTTAAACAGGTTATATGTTCACTTTGTGGGACCGAACAAGAGGTATCTAAGAAGCAATATCATTGCAGTGGCTGTGGAATTTGCAGAACCGGAGGATGTGAAAATGTCTTCCACTGCTTCAAATGTGGTTGTTGCTACCCAACTCAGATGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCACGATTGCCCCGTTTGTTTCGAGTACTTGTTTGAATCTGTGAATGATGTCCTTGTTTTGCCTTGCGGACATACAATACATAAGAGCTGCCTGAATGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTCCAAGTCAGTTTGTGACATGTCAATGATTTGGGAGAAGTTTGACTTGGAGATTGCTGCTACACCAATGCCTGAAGCATATCGAAACAAAATGATTTGGATCCTTTGTAATGATTGCACTAAAACTTCTCACGTCCAGTTCCATCTTGTTGCACAAAAGTGCTTGAACTGCAAATCCTACAACACACGACAGATAAGAGGCTGA 840 0.4226 MGVVAVLPSESLQLDCKDTKHVTEKDVCNHLPSNEEHILGEESSQNINNLRERGYMEYGCQHYRRRCRIRAPCCNEIFNCRHCHNEAKNNINIDQKHRHDVPRHQVKQVICSLCGTEQEVSKKQYHCSGCGICRTGGCENVFHCFKCGCCYPTQMKNSHPCVEGAMHHDCPVCFEYLFESVNDVLVLPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSMIWEKFDLEIAATPMPEAYRNKMIWILCNDCTKTSHVQFHLVAQKCLNCKSYNTRQIRG* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00476 279 ProSiteProfiles Zinc finger RING-type profile. 170 213 IPR001841 -
Phac9g00476 279 SMART ring_2 170 212 IPR001841 -
Phac9g00476 279 ProSiteProfiles Zinc finger CHY-type profile. 53 132 IPR008913 GO:0008270
Phac9g00476 279 Pfam CHY zinc finger 60 131 IPR008913 GO:0008270
Phac9g00476 279 Pfam Zinc-ribbon 217 275 IPR039512 -
Phac9g00476 279 SUPERFAMILY Zinc hairpin stack 109 163 IPR037275 -
Phac9g00476 279 ProSiteProfiles Zinc finger CTCHY-type profile. 103 169 IPR017921 -
Phac9g00476 279 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 39 122 - -
Phac9g00476 279 Pfam Ring finger domain 169 212 IPR001841 -
Phac9g00476 279 SUPERFAMILY RING/U-box 169 221 - -
Phac9g00476 279 SUPERFAMILY CHY zinc finger-like 57 132 IPR037274 GO:0008270
Phac9g00476 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 215 IPR013083 -
Phac9g00476 279 Gene3D - 241 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00476 Phac-Chr9 3057756 3063798 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00476 58 279 C2H2 Transcription Factor Family AT3G18290 34.921 7.97e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00476 K10144 - gmx:100812023 522.702