Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00475 ATGGGAGTGGTGGCAGTATTGCCCTCTGAGTCTCTGCAGCTTGACTGCAAGGACACGAAGCATGTGACTGAGAAAGATGTGTGTAATCATCTACCATCAAATGAAGAGCACATACTTGGAGAAGAATCAAGTCAAAATATCAATAATTTGCGTGAGAGAGGATATATGGAATATGGATGTCAACATTACCGTAGAAGATGCCGTATTAGGGCCCCCTGTTGCAATGAGATTTTTAATTGCCGCCATTGTCACAATGAAGCAAAAAATAATATCAACATTGATCAGAAGCACAGACACGATGTTCCCCGCCATCAAGTTAAACAGGTTATATGTTCACTTTGTGGGACCGAACAAGAGGTTCAGCAAAACTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGACGTGTAAGCTCTTTGATGATGATGTATCTAAGAAGCAATATCATTGCAGTGGCTGTGGAATTTGCAGAACCGGAGGATGTGAAAATGTCTTCCACTGCTTCAAATGTGGTTGTTGCTACCCAACTCAGATGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCACGATTGCCCCGTTTGTTTCGAGTACTTGTTTGAATCTGTGAATGATGTCCTTGTTTTGCCTTGCGGACATACAATACATAAGAGCTGCCTGAATGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTCCAAGTCAGTTTGTGACATGTCAATGATTTGGGAGAAGTTTGACTTGGAGATTGCTGCTACACCAATGCCTGAAGCATATCGAAACAAAATGATTTGGATCCTTTGTAATGATTGCACTAAAACTTCTCACGTCCAGTTCCATCTTGTTGCACAAAAGTGCTTGAACTGCAAATCCTACAACACACGACAGATAAGAGGCTGA 918 0.4216 MGVVAVLPSESLQLDCKDTKHVTEKDVCNHLPSNEEHILGEESSQNINNLRERGYMEYGCQHYRRRCRIRAPCCNEIFNCRHCHNEAKNNINIDQKHRHDVPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKKQYHCSGCGICRTGGCENVFHCFKCGCCYPTQMKNSHPCVEGAMHHDCPVCFEYLFESVNDVLVLPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSMIWEKFDLEIAATPMPEAYRNKMIWILCNDCTKTSHVQFHLVAQKCLNCKSYNTRQIRG* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00475 305 SUPERFAMILY CHY zinc finger-like 57 131 IPR037274 GO:0008270
Phac9g00475 305 SUPERFAMILY RING/U-box 195 247 - -
Phac9g00475 305 ProSiteProfiles Zinc finger CHY-type profile. 53 129 IPR008913 GO:0008270
Phac9g00475 305 Pfam Zinc-ribbon 243 301 IPR039512 -
Phac9g00475 305 SMART ring_2 196 238 IPR001841 -
Phac9g00475 305 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 39 304 - -
Phac9g00475 305 ProSiteProfiles Zinc finger RING-type profile. 196 239 IPR001841 -
Phac9g00475 305 ProSiteProfiles Zinc finger CTCHY-type profile. 131 195 IPR017921 -
Phac9g00475 305 SUPERFAMILY Zinc hairpin stack 132 189 IPR037275 -
Phac9g00475 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 241 IPR013083 -
Phac9g00475 305 Pfam CHY zinc finger 60 141 IPR008913 GO:0008270
Phac9g00475 305 Gene3D - 267 305 - -
Phac9g00475 305 Pfam Ring finger domain 195 238 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00475 Phac-Chr9 3057756 3063798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00475 58 305 C2H2 Transcription Factor Family AT3G18290 38.976 2.17e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00475 K10144 - gmx:100812023 597.816