Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00467 ATGCACGTGAAAGCGGCACAGTCATCGTCCCGGGATCGGACGCATGAATTCCACAGCATCACCGAGAGGTTGAAGAAATCCGGATCAGGGCCCGCTGGGCCCAGCAGTAGCAGTTCTTCCAGATCGGAGGAACAGCGATCATCGATCGCAAATCAATCGGATTTCAATAGAAGGGCCTCCAAAATCGGCTTCGGAATTCACCAAACGTCTCAGAAGCTCTCCAAGCTCGCTAAATTGGCGAAAAGGACTTCGGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTTACTGGTGTTATTAAGCAGGATATCACTGCTTTAAACTCTGCGGTGGTGGATCTTCAGTTGCTATGCAACTCTAGGAATGAGAGTGGAAATGTTTCTGTGGACACAACGAGCCATTCGAGCACCGTGGTGGATGACTTGAAGACGCGGTTGATGAGCGCTACCAAAGAGTTTAAGGATGTTCTCACCATGAGAACTGAGAACATGAAAGTGCATGAAAATAGAAGACAGTTGTTTTCGTCTTCTGCTTCTAAGGATTCGGCAAATCCTTTCATCCGGCAACGGCCTTTGGCTGCTAGGGCGGCAGCTAGTAGTTCTAATGCCCCTGCTCCCTGGGCTAATGAGTCGCCGTCTTCATCTCAGGTGTTTCCCAAGAAGCAAATGGACGCAGAGAGTCAACCGTTGTTGCAGCAGCAACAGCAGCAGGATGTAGTTCCATTACAAGACAGTTACATGCAAAGCAGAACCGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTTAGCAGCATTTTTAATCAGCTAGCGACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATCGATGAAAACATGGACGATACATTGTCAAACGTCGAGGGAGCACAAGGGGCTTTGTTGAAATATCTGAACAGCATATCTTCTAATCGGTGGTTGATGATCAAAATTTTCTTTGTATTGATATTTTTTCTTATGGTTTTCTTATTTTTTGTGGCATAG 1011 0.4629 MHVKAAQSSSRDRTHEFHSITERLKKSGSGPAGPSSSSSSRSEEQRSSIANQSDFNRRASKIGFGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNVSVDTTSHSSTVVDDLKTRLMSATKEFKDVLTMRTENMKVHENRRQLFSSSASKDSANPFIRQRPLAARAAASSSNAPAPWANESPSSSQVFPKKQMDAESQPLLQQQQQQDVVPLQDSYMQSRTEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLSNVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00467 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Phac9g00467 336 Gene3D - 48 299 - -
Phac9g00467 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Phac9g00467 336 MobiDBLite consensus disorder prediction 30 54 - -
Phac9g00467 336 MobiDBLite consensus disorder prediction 1 54 - -
Phac9g00467 336 MobiDBLite consensus disorder prediction 192 234 - -
Phac9g00467 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 26 IPR021538 -
Phac9g00467 336 SMART tSNARE_6 239 306 IPR000727 -
Phac9g00467 336 PANTHER SYNTAXIN 49 328 IPR045242 -
Phac9g00467 336 MobiDBLite consensus disorder prediction 202 234 - -
Phac9g00467 336 CDD SNARE_syntaxin5 247 325 - -
Phac9g00467 336 SUPERFAMILY t-snare proteins 52 299 IPR010989 GO:0016020|GO:0016192
Phac9g00467 336 Pfam SNARE domain 280 332 IPR000727 -
Phac9g00467 336 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00467 Phac-Chr9 3018054 3023063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00467 1 336 SNARE and Associated Proteins AT3G24350 64.208 2.26e-147 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00467 K08490 - gmx:100811494 485.723