Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac9g00445 | ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTCAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATCTTTATTGCAAGGACCAACGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAACAGCAACAACCACAATCCCAGCAGTCGCAGCATCAACAACAACAACAACACATGCAGATGCAACATCTTCTCTTGCAGAGAGCACAACAACAACAGCAGCAACAGCAGCAGCAACAGCAACAACAGCAACAACAACAACATCAACAACAATCACAACAACAACAGTCCCAACCACAACAACAACAAAGCAGGGATAGGGCTCATCTTTTAAATGGTAGTGCAAATGGATTAGTTGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTATGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTTTTGGACCCAAATCATGCATCGATATTAAAGTCAGCTGCTGCTCCTGGCCAGCCTTCTGGGCAAGTTTTGCATGGTGCTGCTGGGGGCATGTCTCCACAAGTTCAAACACGTACTCAGCAATTACCAGGGTCTACTCTGGATATAAAGGGCGAGATTAGTCCTGTTTTAACTCCCAGAGCTGCTGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAACAATAATTTGACTTTGAGAGGGTGGCCACTCACAGGTTTGGAACAACTGCGCACTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCAGCCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTAGCACAACAAAGTTTGGCGTCACCATCTGCAACTGAAGAAAGTAGAAGACTAAGAATGCTATTGAACAGTAGGGGTATTGGTCTAAACAAGGACGGTCTTTCAAATCCTGTTGGTGATGTGGTATCTAATGTCGGATCCCCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGCGGAGACACAGATATGCTAATGAAGGTGAAACTGGCTCAGTTACAGCAGCAACATCAACAACAGTCAAGTACCAATGCACAGCAGCAGCAGCAGCTTCAACAACATGCTCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCTTGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAAATTGGTAGAAAGAGAAAGCAGCCTGGATCTTCATCAGGTCCTGCCAATAGTACAGGCACAGCAAATACGACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCCTCAACTCACACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCCAATAGTGGCAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGTTCTGGAACCCTTACATCACCTTCTAACCAGTTGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTGTCCCATGATGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACAAGTAAAGTTGCGTGTTGCCATTTCTCGTCTGATGGGAAATTACTTGCAAGTGGTGGGCATGACAAAAAGGCCGTTTTATGGTATACGGACACTCTTAAACAAAGAGCTACTCTTGAAGAACATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCATCATTTGACAGAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCTCTTCGCACCTTCACGGGACATTCTACAACTGTTATGTCCCTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCATGTGACGGTGATGGGGAGATACGATACTGGAGCATAAATAATGGCAGCTGTGCTAGAGTCTGGAAGGGTGGCACCACTCAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTCGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGCGTGCCGATTTTCATTAAAGGGACACACAAAAACGGTGGACTGTGTGTGCTGGGACCCTTCTGGGGAGTTGTTGGCATCTGTGAGTGAGGACTCTGTGAAGGTGTGGAGTCTTGGATCAGGGAGTGAAGGGGAATGTGTGCATGAACTTAGCTGTAATGGCAGTAAGTTTCATGCATGTGTTTTCCACCCAACATACCCTTCACTGCTTGCCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTATCTGCTCATGATGGTCTTATTACTGCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCCTCAAGCTCTGGAAGTGA | 2667 | 0.4548 | MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQPQSQQSQHQQQQQHMQMQHLLLQRAQQQQQQQQQQQQQQQQQQHQQQSQQQQSQPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSMDDAAMKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQTRTQQLPGSTLDIKGEISPVLTPRAAGPEGSLMGMPGSNQGNNNLTLRGWPLTGLEQLRTGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSATEESRRLRMLLNSRGIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKVKLAQLQQQHQQQSSTNAQQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGSLSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPALPNSGSSSKPLMMFGTDGSGTLTSPSNQLADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKKAVLWYTDTLKQRATLEEHSSLITDVRFSPSMPRLATSSFDRTVRVWDVDNPGYSLRTFTGHSTTVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVWKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQACRFSLKGHTKTVDCVCWDPSGELLASVSEDSVKVWSLGSGSEGECVHELSCNGSKFHACVFHPTYPSLLAIGCYQSLELWNMSENKTMTLSAHDGLITALAVSTVNGLVASASHDKFLKLWK* | 889 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac9g00445 | 888 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 689 | 731 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | FunFam | Transcriptional corepressor LEUNIG | 732 | 888 | - | - | |
Phac9g00445 | 888 | Coils | Coil | 407 | 427 | - | - | |
Phac9g00445 | 888 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 771 | 811 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | Pfam | WD domain, G-beta repeat | 644 | 678 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | Pfam | WD domain, G-beta repeat | 851 | 888 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | Pfam | WD domain, G-beta repeat | 606 | 635 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | Pfam | WD domain, G-beta repeat | 767 | 802 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | Pfam | WD domain, G-beta repeat | 685 | 722 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | CDD | WD40 | 604 | 888 | - | - | |
Phac9g00445 | 888 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 856 | 888 | - | - | |
Phac9g00445 | 888 | Gene3D | - | 731 | 888 | IPR015943 | GO:0005515 | |
Phac9g00445 | 888 | Gene3D | - | 583 | 730 | IPR015943 | GO:0005515 | |
Phac9g00445 | 888 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 646 | 681 | - | - | |
Phac9g00445 | 888 | MobiDBLite | consensus disorder prediction | 408 | 448 | - | - | |
Phac9g00445 | 888 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 856 | 888 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 665 | 679 | IPR019775 | - | |
Phac9g00445 | 888 | MobiDBLite | consensus disorder prediction | 408 | 538 | - | - | |
Phac9g00445 | 888 | SMART | Lish | 8 | 40 | IPR006594 | GO:0005515 | |
Phac9g00445 | 888 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 646 | 681 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | PANTHER | TRANSCRIPTION ACTIVATOR MSS11 | 2 | 888 | - | - | |
Phac9g00445 | 888 | MobiDBLite | consensus disorder prediction | 459 | 519 | - | - | |
Phac9g00445 | 888 | SMART | WD40_4 | 764 | 802 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | SMART | WD40_4 | 808 | 847 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | SMART | WD40_4 | 597 | 636 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | SMART | WD40_4 | 639 | 678 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | SMART | WD40_4 | 682 | 722 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | SMART | WD40_4 | 849 | 888 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | SMART | WD40_4 | 725 | 761 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 604 | 645 | IPR001680 | GO:0005515 | |
Phac9g00445 | 888 | Coils | Coil | 111 | 148 | - | - | |
Phac9g00445 | 888 | ProSiteProfiles | LIS1 homology (LisH) motif profile. | 8 | 40 | IPR006594 | GO:0005515 | |
Phac9g00445 | 888 | Pfam | LisH | 10 | 36 | IPR006594 | GO:0005515 | |
Phac9g00445 | 888 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 689 | 727 | - | - | |
Phac9g00445 | 888 | SUPERFAMILY | WD40 repeat-like | 602 | 888 | IPR036322 | GO:0005515 | |
Phac9g00445 | 888 | MobiDBLite | consensus disorder prediction | 89 | 118 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac9g00445 | Phac-Chr9 | 2794349 | 2803376 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac9g00445 | 683 | 887 | Miscellaneous Gene Families | AT5G08390 | 23.810 | 6.16e-12 | 67.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | LUG | Phac9g00445 | WD40 | 0.0077 | CL0186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac9g00445 | - | - | pvu:PHAVU_009G096600g | 1369.76 |