Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00445 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTCAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATCTTTATTGCAAGGACCAACGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAACAGCAACAACCACAATCCCAGCAGTCGCAGCATCAACAACAACAACAACACATGCAGATGCAACATCTTCTCTTGCAGAGAGCACAACAACAACAGCAGCAACAGCAGCAGCAACAGCAACAACAGCAACAACAACAACATCAACAACAATCACAACAACAACAGTCCCAACCACAACAACAACAAAGCAGGGATAGGGCTCATCTTTTAAATGGTAGTGCAAATGGATTAGTTGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTATGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTTTTGGACCCAAATCATGCATCGATATTAAAGTCAGCTGCTGCTCCTGGCCAGCCTTCTGGGCAAGTTTTGCATGGTGCTGCTGGGGGCATGTCTCCACAAGTTCAAACACGTACTCAGCAATTACCAGGGTCTACTCTGGATATAAAGGGCGAGATTAGTCCTGTTTTAACTCCCAGAGCTGCTGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAACAATAATTTGACTTTGAGAGGGTGGCCACTCACAGGTTTGGAACAACTGCGCACTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCAGCCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTAGCACAACAAAGTTTGGCGTCACCATCTGCAACTGAAGAAAGTAGAAGACTAAGAATGCTATTGAACAGTAGGGGTATTGGTCTAAACAAGGACGGTCTTTCAAATCCTGTTGGTGATGTGGTATCTAATGTCGGATCCCCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGCGGAGACACAGATATGCTAATGAAGGTGAAACTGGCTCAGTTACAGCAGCAACATCAACAACAGTCAAGTACCAATGCACAGCAGCAGCAGCAGCTTCAACAACATGCTCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCTTGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAAATTGGTAGAAAGAGAAAGCAGCCTGGATCTTCATCAGGTCCTGCCAATAGTACAGGCACAGCAAATACGACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCCTCAACTCACACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCCAATAGTGGCAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGTTCTGGAACCCTTACATCACCTTCTAACCAGTTGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTGTCCCATGATGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACAAGTAAAGTTGCGTGTTGCCATTTCTCGTCTGATGGGAAATTACTTGCAAGTGGTGGGCATGACAAAAAGGCCGTTTTATGGTATACGGACACTCTTAAACAAAGAGCTACTCTTGAAGAACATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCATCATTTGACAGAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCTCTTCGCACCTTCACGGGACATTCTACAACTGTTATGTCCCTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCATGTGACGGTGATGGGGAGATACGATACTGGAGCATAAATAATGGCAGCTGTGCTAGAGTCTGGAAGGGTGGCACCACTCAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTCGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGCGTGCCGATTTTCATTAAAGGGACACACAAAAACGGTGGACTGTGTGTGCTGGGACCCTTCTGGGGAGTTGTTGGCATCTGTGAGTGAGGACTCTGTGAAGGTGTGGAGTCTTGGATCAGGGAGTGAAGGGGAATGTGTGCATGAACTTAGCTGTAATGGCAGTAAGTTTCATGCATGTGTTTTCCACCCAACATACCCTTCACTGCTTGCCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTATCTGCTCATGATGGTCTTATTACTGCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCCTCAAGCTCTGGAAGTGA 2667 0.4548 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQPQSQQSQHQQQQQHMQMQHLLLQRAQQQQQQQQQQQQQQQQQQHQQQSQQQQSQPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSMDDAAMKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQTRTQQLPGSTLDIKGEISPVLTPRAAGPEGSLMGMPGSNQGNNNLTLRGWPLTGLEQLRTGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSATEESRRLRMLLNSRGIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKVKLAQLQQQHQQQSSTNAQQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGSLSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPALPNSGSSSKPLMMFGTDGSGTLTSPSNQLADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKKAVLWYTDTLKQRATLEEHSSLITDVRFSPSMPRLATSSFDRTVRVWDVDNPGYSLRTFTGHSTTVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVWKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQACRFSLKGHTKTVDCVCWDPSGELLASVSEDSVKVWSLGSGSEGECVHELSCNGSKFHACVFHPTYPSLLAIGCYQSLELWNMSENKTMTLSAHDGLITALAVSTVNGLVASASHDKFLKLWK* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00445 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 731 IPR001680 GO:0005515
Phac9g00445 888 FunFam Transcriptional corepressor LEUNIG 732 888 - -
Phac9g00445 888 Coils Coil 407 427 - -
Phac9g00445 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 771 811 IPR001680 GO:0005515
Phac9g00445 888 Pfam WD domain, G-beta repeat 644 678 IPR001680 GO:0005515
Phac9g00445 888 Pfam WD domain, G-beta repeat 851 888 IPR001680 GO:0005515
Phac9g00445 888 Pfam WD domain, G-beta repeat 606 635 IPR001680 GO:0005515
Phac9g00445 888 Pfam WD domain, G-beta repeat 767 802 IPR001680 GO:0005515
Phac9g00445 888 Pfam WD domain, G-beta repeat 685 722 IPR001680 GO:0005515
Phac9g00445 888 CDD WD40 604 888 - -
Phac9g00445 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 856 888 - -
Phac9g00445 888 Gene3D - 731 888 IPR015943 GO:0005515
Phac9g00445 888 Gene3D - 583 730 IPR015943 GO:0005515
Phac9g00445 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 646 681 - -
Phac9g00445 888 MobiDBLite consensus disorder prediction 408 448 - -
Phac9g00445 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 856 888 IPR001680 GO:0005515
Phac9g00445 888 ProSitePatterns Trp-Asp (WD) repeats signature. 665 679 IPR019775 -
Phac9g00445 888 MobiDBLite consensus disorder prediction 408 538 - -
Phac9g00445 888 SMART Lish 8 40 IPR006594 GO:0005515
Phac9g00445 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 646 681 IPR001680 GO:0005515
Phac9g00445 888 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 888 - -
Phac9g00445 888 MobiDBLite consensus disorder prediction 459 519 - -
Phac9g00445 888 SMART WD40_4 764 802 IPR001680 GO:0005515
Phac9g00445 888 SMART WD40_4 808 847 IPR001680 GO:0005515
Phac9g00445 888 SMART WD40_4 597 636 IPR001680 GO:0005515
Phac9g00445 888 SMART WD40_4 639 678 IPR001680 GO:0005515
Phac9g00445 888 SMART WD40_4 682 722 IPR001680 GO:0005515
Phac9g00445 888 SMART WD40_4 849 888 IPR001680 GO:0005515
Phac9g00445 888 SMART WD40_4 725 761 IPR001680 GO:0005515
Phac9g00445 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 645 IPR001680 GO:0005515
Phac9g00445 888 Coils Coil 111 148 - -
Phac9g00445 888 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Phac9g00445 888 Pfam LisH 10 36 IPR006594 GO:0005515
Phac9g00445 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 689 727 - -
Phac9g00445 888 SUPERFAMILY WD40 repeat-like 602 888 IPR036322 GO:0005515
Phac9g00445 888 MobiDBLite consensus disorder prediction 89 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00445 Phac-Chr9 2794349 2803376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00445 683 887 Miscellaneous Gene Families AT5G08390 23.810 6.16e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Phac9g00445 WD40 0.0077 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00445 - - pvu:PHAVU_009G096600g 1369.76