Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00444 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTCAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATCTTTATTGCAAGGACCAACGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAACAGCAACAACCACAATCCCAGCAGTCGCAGCATCAACAACAACAACAACACATGCAGATGCAACATCTTCTCTTGCAGAGAGCACAACAACAACAGCAGCAACAGCAGCAGCAACAGCAACAACAGCAACAACAACAACATCAACAACAATCACAACAACAACAGTCCCAACCACAACAACAACAAAGCAGGGATAGGGCTCATCTTTTAAATGGTAGTGCAAATGGATTAGTTGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTATGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTTTTGGACCCAAATCATGCATCGATATTAAAGTCAGCTGCTGCTCCTGGCCAGCCTTCTGGGCAAGTTTTGCATGGTGCTGCTGGGGGCATGTCTCCACAAGTTCAAACACGTACTCAGCAATTACCAGGGTCTACTCTGGATATAAAGGGCGAGATTAGTCCTGTTTTAACTCCCAGAGCTGCTGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAACAATAATTTGACTTTGAGAGGGTGGCCACTCACAGGTTTGGAACAACTGCGCACTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCAGCCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTAGCACAACAAAGTTTGGCGTCACCATCTGCAACTGAAGAAAGTAGAAGACTAAGAATGCTATTGAACAGTAGGGGTATTGGTCTAAACAAGGACGGTCTTTCAAATCCTGTTGGTGATGTGGTATCTAATGTCGGATCCCCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGCGGAGACACAGATATGCTAATGAAGGTGAAACTGGCTCAGTTACAGCAGCAACATCAACAACAGTCAAGTACCAATGCACAGCAGCAGCAGCAGCTTCAACAACATGCTCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCTTGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAAATTGGTAGAAAGAGAAAGCAGCCTGGATCTTCATCAGGTCCTGCCAATAGTACAGGCACAGCAAATACGACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCCTCAACTCACACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCCAATAGTGGCAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGTTCTGGAACCCTTACATCACCTTCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTGTCCCATGATGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACAAGTAAAGTTGCGTGTTGCCATTTCTCGTCTGATGGGAAATTACTTGCAAGTGGTGGGCATGACAAAAAGGCCGTTTTATGGTATACGGACACTCTTAAACAAAGAGCTACTCTTGAAGAACATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCATCATTTGACAGAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCTCTTCGCACCTTCACGGGACATTCTACAACTGTTATGTCCCTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCATGTGACGGTGATGGGGAGATACGATACTGGAGCATAAATAATGGCAGCTGTGCTAGAGTCTGGAAGGGTGGCACCACTCAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTCGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGCGTGCCGATTTTCATTAAAGGGACACACAAAAACGGTGGACTGTGTGTGCTGGGACCCTTCTGGGGAGTTGTTGGCATCTGTGAGTGAGGACTCTGTGAAGGTGTGGAGTCTTGGATCAGGGAGTGAAGGGGAATGTGTGCATGAACTTAGCTGTAATGGCAGTAAGTTTCATGCATGTGTTTTCCACCCAACATACCCTTCACTGCTTGCCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTATCTGCTCATGATGGTCTTATTACTGCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCCTCAAGCTCTGGAAGTGA 2694 0.4543 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQPQSQQSQHQQQQQHMQMQHLLLQRAQQQQQQQQQQQQQQQQQQHQQQSQQQQSQPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSMDDAAMKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQTRTQQLPGSTLDIKGEISPVLTPRAAGPEGSLMGMPGSNQGNNNLTLRGWPLTGLEQLRTGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSATEESRRLRMLLNSRGIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKVKLAQLQQQHQQQSSTNAQQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGSLSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPALPNSGSSSKPLMMFGTDGSGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKKAVLWYTDTLKQRATLEEHSSLITDVRFSPSMPRLATSSFDRTVRVWDVDNPGYSLRTFTGHSTTVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVWKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQACRFSLKGHTKTVDCVCWDPSGELLASVSEDSVKVWSLGSGSEGECVHELSCNGSKFHACVFHPTYPSLLAIGCYQSLELWNMSENKTMTLSAHDGLITALAVSTVNGLVASASHDKFLKLWK* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00444 897 FunFam Transcriptional corepressor LEUNIG 741 897 - -
Phac9g00444 897 Coils Coil 407 427 - -
Phac9g00444 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 698 736 - -
Phac9g00444 897 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 897 - -
Phac9g00444 897 Gene3D - 592 739 IPR015943 GO:0005515
Phac9g00444 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 655 690 IPR001680 GO:0005515
Phac9g00444 897 MobiDBLite consensus disorder prediction 408 448 - -
Phac9g00444 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 655 690 - -
Phac9g00444 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 865 897 IPR001680 GO:0005515
Phac9g00444 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 865 897 - -
Phac9g00444 897 ProSitePatterns Trp-Asp (WD) repeats signature. 674 688 IPR019775 -
Phac9g00444 897 MobiDBLite consensus disorder prediction 408 538 - -
Phac9g00444 897 SMART WD40_4 734 770 IPR001680 GO:0005515
Phac9g00444 897 SMART WD40_4 773 811 IPR001680 GO:0005515
Phac9g00444 897 SMART WD40_4 817 856 IPR001680 GO:0005515
Phac9g00444 897 SMART WD40_4 648 687 IPR001680 GO:0005515
Phac9g00444 897 SMART WD40_4 858 897 IPR001680 GO:0005515
Phac9g00444 897 SMART WD40_4 606 645 IPR001680 GO:0005515
Phac9g00444 897 SMART WD40_4 691 731 IPR001680 GO:0005515
Phac9g00444 897 SMART Lish 8 40 IPR006594 GO:0005515
Phac9g00444 897 CDD WD40 613 897 - -
Phac9g00444 897 Pfam WD domain, G-beta repeat 653 687 IPR001680 GO:0005515
Phac9g00444 897 Pfam WD domain, G-beta repeat 860 897 IPR001680 GO:0005515
Phac9g00444 897 Pfam WD domain, G-beta repeat 615 644 IPR001680 GO:0005515
Phac9g00444 897 Pfam WD domain, G-beta repeat 694 731 IPR001680 GO:0005515
Phac9g00444 897 Pfam WD domain, G-beta repeat 776 811 IPR001680 GO:0005515
Phac9g00444 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 613 654 IPR001680 GO:0005515
Phac9g00444 897 MobiDBLite consensus disorder prediction 459 519 - -
Phac9g00444 897 Coils Coil 111 148 - -
Phac9g00444 897 Gene3D - 740 897 IPR015943 GO:0005515
Phac9g00444 897 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Phac9g00444 897 Pfam LisH 10 36 IPR006594 GO:0005515
Phac9g00444 897 MobiDBLite consensus disorder prediction 89 118 - -
Phac9g00444 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 698 740 IPR001680 GO:0005515
Phac9g00444 897 SUPERFAMILY WD40 repeat-like 611 897 IPR036322 GO:0005515
Phac9g00444 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 780 820 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00444 Phac-Chr9 2794349 2803376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00444 692 896 Miscellaneous Gene Families AT5G08390 23.810 7.61e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Phac9g00444 WD40 0.0078 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00444 - - pvu:PHAVU_009G096600g 1362.05