Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac9g00400 | ATGGGAGAAACCAAGGACGAAACATACGAGGAAGAGCTTATTGACTACGAGGAGGAAGAAGACAAGGCTCCCGACTCCGTCGGAGCTAAAGTCAACGGCGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCGGGATTTGAGCATCCTTCTGAAGTGCAACATGAGTGCATCCCTCAAGCAATTCTAGGAATGGATGTAATTTGCCAAGCGAAATCTGGAATGGGTAAGACTGCTGTCTTTGTTCTCTCGACTCTGCAGCAGATTGATCCCGTTCCCGGCCAAGTTTCTGCTCTTGTTCTGTGTCATACAAGAGAATTAGCATACCAGATATGCCATGAGTTTGAGAGGTTCAGTACCTATTTACCCGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTTAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTCGGAACACCTGGAAGAATACTAGCATTGACTAGGGATAAGGATCTTTCTTTGAAGAATGTGAGACATTTCATATTAGATGAATGCGACAAGATGCTGGAATCACTGGATATGCGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCCGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACACTTCACGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTTATTTTTGTTAAAAGTGTTAGTAGAGCAGCCGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCTTCTATATGCATCCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAAGAGGGGCATACAAGGATTCTTGTTGCAACAGATTTGGTTGGAAGAGGGATTGACATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCTGCAGACACATACTTGCACAGGGTTGGTCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCTTGTTCTACTGACGTTGATGTTCTCAACAATGTTCAGTCAAGGTTTGAGGTGGATATAAAACAGCTGCCTGAGCAGATTGATACCTCAACTTATATGCCATCGTAG | 1284 | 0.4283 | MGETKDETYEEELIDYEEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS* | 428 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac9g00400 | 427 | CDD | DEADc_DDX39 | 45 | 252 | - | - | |
Phac9g00400 | 427 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Phac9g00400 | 427 | SMART | helicmild6 | 302 | 383 | IPR001650 | - | |
Phac9g00400 | 427 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 46 | 74 | IPR014014 | GO:0003724 | |
Phac9g00400 | 427 | Pfam | DEAD/DEAH box helicase | 71 | 236 | IPR011545 | GO:0003676|GO:0005524 | |
Phac9g00400 | 427 | Pfam | Helicase conserved C-terminal domain | 276 | 383 | IPR001650 | - | |
Phac9g00400 | 427 | FunFam | DEAD-box ATP-dependent RNA helicase | 259 | 427 | - | - | |
Phac9g00400 | 427 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 115 | 397 | IPR027417 | - | |
Phac9g00400 | 427 | FunFam | DEAD-box ATP-dependent RNA helicase 56-like | 34 | 252 | - | - | |
Phac9g00400 | 427 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 77 | 250 | IPR014001 | - | |
Phac9g00400 | 427 | SMART | ultradead3 | 65 | 266 | IPR014001 | - | |
Phac9g00400 | 427 | Gene3D | - | 259 | 426 | IPR027417 | - | |
Phac9g00400 | 427 | Gene3D | - | 42 | 258 | IPR027417 | - | |
Phac9g00400 | 427 | CDD | SF2_C_DEAD | 263 | 392 | - | - | |
Phac9g00400 | 427 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Phac9g00400 | 427 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 262 | 423 | IPR001650 | - | |
Phac9g00400 | 427 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 45 | 401 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac9g00400 | Phac-Chr9 | 2524103 | 2530858 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac9g00400 | 1 | 427 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 82.942 | 0.0 | 758 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac9g00400 | K12812 | - | gmx:100808957 | 832.402 |