Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00342 ATGGGAAAACCCACAGGGAAGAAGAAGGGTATCGATGCTACTCCGGCTGCTGCAAATTCACACGCCAAATCTGCCAAGTCCTCCAAAGCTTTCGATGAAGACACGGCAATGTTCATTAACATGTCACAAGAGTTCAGGGAAGAAGGTAACAAATTGTTTCAGAAGAAGGACCACGAAGGCGCTATGCTCAAGTACGAGAAGGCACTGAAGCTGCTTCCGAAGAACCACATAGATGTCGCTCACCTTCATACTAACATGGCCACGTGTTACATGCAATTGGGTCTCGGGGAATACCCTCGAGCCATTCACGAATGCAATTTGGCGCTGGAAGTGTCTCCAAAGTACAGCAAAGCTCTTCTGAAAAGAGCCACATGCTATCGCGAGCTTAATCGTCTTGATTTGGCGCTCAGGGATGTCAATCTTGTTTTGAGCATGGAGCCAAATAATCTCACAGCGTTGGAATCTCTCGAGAGTCTCACGAAGTCAAGGGAAGAAAAGGGGGTCTCTGTTGATGATAAAAGGATGGCTTTTGATACCACCGTTTATCACTCTCCTTCTCCGCCTTCGCAAAAACTGAAGAAAAAGAGAGGGAAAAAAATTGAGGACAAGGTGATTGTGAAGGAAAAGCTGGGTGTTATTGTTGAGGATAAAAAGGTGGTTTCTAAAACAATTGGGCAAGAAAGCAAGGTGGTTTCAAAAGCAATTGAGCACGAAAAAAAGGTGGATTCAAAAGCAATTGAGCACGAAAAAAAGGTGGTGGAAGTCGAACCTGTGAAGGAAGAAAAACCTATCACGATCACGAGGAGCGTCAAGTTGGTGTTTGGAGAAGATATAAGGTGGGCTCAATTACCCGTGAATTGTAGTGCGAAGTTGGTGAGGGATATAGCTAGGGACCGGTTTCCGGGTTTGAAGGGAGTTCTTGTCAAGTATAAGGATAAAGAAGGTGATTTGGTTACTATCACTACTACAGATGAGCTGAGGTTAGCTGAAAAGTCTGCTCCTGAGAAGACATCGTTTAGGCTTTATATTACCGAGGTCAGTCCAGATCAAGAACCTTCTTATGATGGAACAACAACCAACGGGGATGAGGTGCAAAGGGATGGTGGAAAAAGAAATGATGGTGTTGAGAATACGGGTATGGAAGGAGGCAGAGATGAAGATGCTACAAAAAGGATACTTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGCTGTTCAAGAACCATGTAGGGTTTGAGTCAGATTCTTATCTAGATACTCATGAGTTTGCAATGAAGCTGTACGGAGAAGCGATGGAGGATACGGTAGCAAGCACTGAGGCTCAAGAACTTTTTGGAATTGCTGCTGATAAGTTTCAAGAGATGGCTGCCTTGGCACTGTTTAATTGGGGAAGTGTTCAAATGTCCAGGGCAAGGAACCAAGGTTCATTTTCGGAGGATGGGACCAGAGAGTCTTCCTTGGAACATATAAAAGCTGCATATGAGTTGGCACGAAGGGAGTACGAGAAAGCAGAAATGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTACGATGGATATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCATTGGCATGCAAGGACTCAGATGCTGGCTTTTCTGATGAGGTTCTACAACTTTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGGTTGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAGTATAGAGAACAGTTAGAGAAAATGGGGTTGGATGGTCTTGTCAAAGATGTTTCTGATGATGAAGCTTCAAAGCAAGCTGCAAAGATGAGGTCTCAGATACACCTTCTATGGGGAACCTTGTTGTATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCTGGAACTTCTGGAACAGATATTGCTTTCATTGTAAAGAATCACTGCTCAAATGAAACAGCACTTGAAGGGTTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTACGATGCTCAGGGGTGGCAGTTTGGTGATCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTTCATTCCATCTTGGAGCAGTTTTAA 2184 0.4418 MGKPTGKKKGIDATPAAANSHAKSAKSSKAFDEDTAMFINMSQEFREEGNKLFQKKDHEGAMLKYEKALKLLPKNHIDVAHLHTNMATCYMQLGLGEYPRAIHECNLALEVSPKYSKALLKRATCYRELNRLDLALRDVNLVLSMEPNNLTALESLESLTKSREEKGVSVDDKRMAFDTTVYHSPSPPSQKLKKKRGKKIEDKVIVKEKLGVIVEDKKVVSKTIGQESKVVSKAIEHEKKVDSKAIEHEKKVVEVEPVKEEKPITITRSVKLVFGEDIRWAQLPVNCSAKLVRDIARDRFPGLKGVLVKYKDKEGDLVTITTTDELRLAEKSAPEKTSFRLYITEVSPDQEPSYDGTTTNGDEVQRDGGKRNDGVENTGMEGGRDEDATKRILTVEDWLLQFARLFKNHVGFESDSYLDTHEFAMKLYGEAMEDTVASTEAQELFGIAADKFQEMAALALFNWGSVQMSRARNQGSFSEDGTRESSLEHIKAAYELARREYEKAEMRYEEALKIKPDFYDGYLALGHQQFEQARLCWCYALACKDSDAGFSDEVLQLYNKAEDSMEKGILMWEEVEEQRLNGISKSDKYREQLEKMGLDGLVKDVSDDEASKQAAKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSGTDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFGDPSFRLEPLFRRRVPKLHSILEQF* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00342 727 SUPERFAMILY TPR-like 456 621 IPR011990 GO:0005515
Phac9g00342 727 MobiDBLite consensus disorder prediction 348 387 - -
Phac9g00342 727 SUPERFAMILY TPR-like 33 157 IPR011990 GO:0005515
Phac9g00342 727 SUPERFAMILY CAD & PB1 domains 266 355 - -
Phac9g00342 727 Gene3D Tetratricopeptide repeat domain 34 177 IPR011990 GO:0005515
Phac9g00342 727 Gene3D - 255 346 - -
Phac9g00342 727 ProSiteProfiles TPR repeat profile. 116 149 IPR019734 GO:0005515
Phac9g00342 727 SMART PB1_new 267 346 IPR000270 GO:0005515
Phac9g00342 727 ProSiteProfiles TPR repeat profile. 42 75 IPR019734 GO:0005515
Phac9g00342 727 MobiDBLite consensus disorder prediction 364 387 - -
Phac9g00342 727 Pfam PB1 domain 267 344 IPR000270 GO:0005515
Phac9g00342 727 SMART tpr_5 80 115 IPR019734 GO:0005515
Phac9g00342 727 SMART tpr_5 116 149 IPR019734 GO:0005515
Phac9g00342 727 SMART tpr_5 485 518 IPR019734 GO:0005515
Phac9g00342 727 SMART tpr_5 42 75 IPR019734 GO:0005515
Phac9g00342 727 CDD PB1 270 343 - -
Phac9g00342 727 ProSiteProfiles PB1 domain profile. 267 346 IPR000270 GO:0005515
Phac9g00342 727 MobiDBLite consensus disorder prediction 1 28 - -
Phac9g00342 727 PANTHER PROTEIN CLMP1 1 725 IPR044517 -
Phac9g00342 727 Coils Coil 487 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00342 Phac-Chr9 2223071 2226900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00342 26 149 Calmodulin-binding Proteins AT3G25230 31.579 6.31e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00342 K26538 - gmx:100805760 1169.45