Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00329 ATGGCGTACCACAACCCTCAAGACCTTCCACTTCACCATTTCACTGACCAACAACACCATAACCAAACTCTCACTCACTCATCTCTCCTCTCCGACCCTACCTCCAAACCTCCCTCCGATCCTCACCAACCTGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCGCGCACTACACCGACAACACTACCACAAACAACAATAATGACAACAACAACAACTCCGACACCAACGTTAACGCAGCAAACAACAGCGCCACCAACTTCCTCAACCTCCACACTGCCGCTACGGACTCCGGCCAATGGCTCGCGCGCCCGATCCTCCACCGCAACCAGAGCGAGGTCATCGACGACGTCGCGGCAGCAGGCGACTCCGCCATGGCCGGCGCCGGATCCGGCGATTTGAAGAGCGAGGCGGCGGCAGTGGAGGGCGGTGGAGACGGCCTGATGAACTGGCAGAATGCAAGGTTCAAGGCGGAGATTCTATCGCACCCTCTGTACGAACAGCTTCTGTCGGCACATGTAGCGTGTCTTCGGATCGCCACACCGGTCGACCAGTTGCCCAGGATCGACGCTCAGCTTGCACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCTTTCGGACAAGCCATAGTTGGGGATGACAAGGAACTCGATCAGTTCTTGTCGCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAGCTCCAACAGCATGTCAGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGACGACGAAGATGAGCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTCCTGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAACGAGAGGTCCCTCATGGAACGTGTGAGACATGAATTAAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAATCCCTCCACTTCCACTGTCTTGAAGAGCAAGCGCAAAAGATGA 1251 0.5196 MAYHNPQDLPLHHFTDQQHHNQTLTHSSLLSDPTSKPPSDPHQPAPNWLNNALLRAHYTDNTTTNNNNDNNNNSDTNVNAANNSATNFLNLHTAATDSGQWLARPILHRNQSEVIDDVAAAGDSAMAGAGSGDLKSEAAAVEGGGDGLMNWQNARFKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00329 416 CDD homeodomain 342 403 IPR001356 GO:0003677
Phac9g00329 416 ProSiteProfiles ELK domain profile. 319 339 IPR005539 GO:0003677
Phac9g00329 416 MobiDBLite consensus disorder prediction 262 281 - -
Phac9g00329 416 Pfam KNOX1 domain 157 197 IPR005540 GO:0003677|GO:0005634
Phac9g00329 416 ProSiteProfiles 'Homeobox' domain profile. 339 402 IPR001356 GO:0003677
Phac9g00329 416 SMART KNOX1_2 154 198 IPR005540 GO:0003677|GO:0005634
Phac9g00329 416 SMART ELK_2 319 340 IPR005539 GO:0003677
Phac9g00329 416 SMART KNOX2_2 207 262 IPR005541 GO:0003677|GO:0005634
Phac9g00329 416 Pfam ELK domain 319 340 IPR005539 GO:0003677
Phac9g00329 416 MobiDBLite consensus disorder prediction 21 36 - -
Phac9g00329 416 Pfam Homeobox KN domain 359 398 IPR008422 GO:0003677|GO:0006355
Phac9g00329 416 FunFam homeobox protein knotted-1-like 3 isoform X1 340 401 - -
Phac9g00329 416 Pfam KNOX2 domain 211 261 IPR005541 GO:0003677|GO:0005634
Phac9g00329 416 SUPERFAMILY Homeodomain-like 341 404 IPR009057 -
Phac9g00329 416 MobiDBLite consensus disorder prediction 60 81 - -
Phac9g00329 416 SMART HOX_1 341 406 IPR001356 GO:0003677
Phac9g00329 416 MobiDBLite consensus disorder prediction 21 48 - -
Phac9g00329 416 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 401 - -
Phac9g00329 416 Gene3D - 338 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00329 Phac-Chr9 2174393 2178543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00329 1 416 Homeobox Transcription Factor Family AT5G25220 65.929 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phac9g00329 KNOX2 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00329 - - pvu:PHAVU_009G090500g 789.26