Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac9g00328 | ATGGCGTACCACAACCCTCAAGACCTTCCACTTCACCATTTCACTGACCAACAACACCATAACCAAACTCTCACTCACTCATCTCTCCTCTCCGACCCTACCTCCAAACCTCCCTCCGATCCTCACCAACCTGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCGCGCACTACACCGACAACACTACCACAAACAACAATAATGACAACAACAACAACTCCGACACCAACGTTAACGCAGCAAACAACAGCGCCACCAACTTCCTCAACCTCCACACTGCCGCTACGGACTCCGGCCAATGGCTCGCGCGCCCGATCCTCCACCGCAACCAGAGCGAGGTCATCGACGACGTCGCGGCAGCAGGCGACTCCGCCATGGCCGGCGCCGGATCCGGCGATTTGAAGAGCGAGGCGGCGGCAGTGGAGGGCGGTGGAGACGGCCTGATGAACTGGCAGAATGCAAGGTTCAAGGCGGAGATTCTATCGCACCCTCTGTACGAACAGCTTCTGTCGGCACATGTAGCGTGTCTTCGGATCGCCACACCGGTCGACCAGTTGCCCAGGATCGACGCTCAGCTTGCACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCTTTCGGACAAGCCATAGTTGGGGATGACAAGGAACTCGATCAGTTCTTGTCGCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAGCTCCAACAGCATGTCAGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGACGACGAAGATGAGCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTCCTGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAACGAGAGGTCCCTCATGGAACGTGTGAGACATGAATTAAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAATCCCTCCACTTCCACTGTCTTGAAGAGCAAGCGCAAAAGAAGCAATGCAGATGATAATAGTGCTGTTCATCATATGTAA | 1287 | 0.5144 | MAYHNPQDLPLHHFTDQQHHNQTLTHSSLLSDPTSKPPSDPHQPAPNWLNNALLRAHYTDNTTTNNNNDNNNNSDTNVNAANNSATNFLNLHTAATDSGQWLARPILHRNQSEVIDDVAAAGDSAMAGAGSGDLKSEAAAVEGGGDGLMNWQNARFKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSNADDNSAVHHM* | 429 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac9g00328 | 428 | CDD | homeodomain | 342 | 403 | IPR001356 | GO:0003677 | |
Phac9g00328 | 428 | Gene3D | - | 340 | 401 | - | - | |
Phac9g00328 | 428 | MobiDBLite | consensus disorder prediction | 413 | 428 | - | - | |
Phac9g00328 | 428 | ProSiteProfiles | ELK domain profile. | 319 | 339 | IPR005539 | GO:0003677 | |
Phac9g00328 | 428 | MobiDBLite | consensus disorder prediction | 262 | 281 | - | - | |
Phac9g00328 | 428 | Pfam | ELK domain | 319 | 340 | IPR005539 | GO:0003677 | |
Phac9g00328 | 428 | ProSiteProfiles | 'Homeobox' domain profile. | 339 | 402 | IPR001356 | GO:0003677 | |
Phac9g00328 | 428 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 340 | 401 | - | - | |
Phac9g00328 | 428 | SMART | KNOX1_2 | 154 | 198 | IPR005540 | GO:0003677|GO:0005634 | |
Phac9g00328 | 428 | SMART | ELK_2 | 319 | 340 | IPR005539 | GO:0003677 | |
Phac9g00328 | 428 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 72 | 407 | - | - | |
Phac9g00328 | 428 | SMART | KNOX2_2 | 207 | 262 | IPR005541 | GO:0003677|GO:0005634 | |
Phac9g00328 | 428 | MobiDBLite | consensus disorder prediction | 21 | 36 | - | - | |
Phac9g00328 | 428 | Pfam | KNOX1 domain | 157 | 197 | IPR005540 | GO:0003677|GO:0005634 | |
Phac9g00328 | 428 | MobiDBLite | consensus disorder prediction | 402 | 428 | - | - | |
Phac9g00328 | 428 | MobiDBLite | consensus disorder prediction | 60 | 81 | - | - | |
Phac9g00328 | 428 | SUPERFAMILY | Homeodomain-like | 341 | 404 | IPR009057 | - | |
Phac9g00328 | 428 | SMART | HOX_1 | 341 | 406 | IPR001356 | GO:0003677 | |
Phac9g00328 | 428 | MobiDBLite | consensus disorder prediction | 21 | 48 | - | - | |
Phac9g00328 | 428 | Pfam | KNOX2 domain | 211 | 261 | IPR005541 | GO:0003677|GO:0005634 | |
Phac9g00328 | 428 | Pfam | Homeobox KN domain | 359 | 398 | IPR008422 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac9g00328 | Phac-Chr9 | 2174393 | 2178951 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac9g00328 | 1 | 416 | Homeobox Transcription Factor Family | AT5G25220 | 65.929 | 0.0 | 549 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-KNOX | Phac9g00328 | KNOX2 | 1.4e-20 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac9g00328 | - | - | pvu:PHAVU_009G090500g | 789.26 |