Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00312 ATGGAAACACTGAGCTACGAGGCTCCCTTCTATGATAGCCTTTCTGCTGTAGAGACTCCTCCAAGTCCAAGCACACCATTGCAGAATCCACAGGAGAAGAAACAGCTATCTGTTGAGGAAGAAGAAGAAGAAGAAAAAGAGGCAAAAACAGGTACTTTACTGGATCTAAATATCCCTGGTGATGATTCGGCTACTGAGTGCAGTCCAGTGCTGAATCTCATCACTTGTCTGAACACGGATTTGTCATCAGAAAACCCCCATGAGCCAAGGGTGTTCTCTTGCAACTACTGTCATAGGAAGTTCTACAGTTCACAAGCTTTAGGGGGACACCAAAATGCTCACAAAAGAGAGAGGTCAGTAGCAAAGAGAGGTCACAGATCAGCATCACCCATGATGGCCCCAGCAACAGCTTTTGGAATTCCCTTTCTCCACAATCACCTTCCTCACTATGCCACTGTGGCTTCTCTGCCTCTCCATGGTGCTTGTATTAATAAACCACTTGGAATTCAGGCTCACTGTATGATTCACAAGCCTCCTCCTCCTCCTTCTTCTCATCTTTCATTCAATGGGTTTTCAAACACTTTTGGACATCATCATGGGTGGTCAAGGTCAAGACCCCTTATTACTCAACAACCTGGAATAGGAAAGTTAACTGTGGAAAGTTGTCACAAAACATCAAGAGGCAGTTTTGGGAGATTAGAAGCGGGGAGCACCATGCTCAATTCAGCAGTTAATGAAGAAATAAGTGAATATCTGGTTAGTGAAAATGTTAGTTTGAAGAGTAGTCAAGAACAAAAGAAACACCTTGACTTGTCCCTGAAGCTCTAA 828 0.4384 METLSYEAPFYDSLSAVETPPSPSTPLQNPQEKKQLSVEEEEEEEKEAKTGTLLDLNIPGDDSATECSPVLNLITCLNTDLSSENPHEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSVAKRGHRSASPMMAPATAFGIPFLHNHLPHYATVASLPLHGACINKPLGIQAHCMIHKPPPPPSSHLSFNGFSNTFGHHHGWSRSRPLITQQPGIGKLTVESCHKTSRGSFGRLEAGSTMLNSAVNEEISEYLVSENVSLKSSQEQKKHLDLSLKL* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00312 275 Gene3D Classic Zinc Finger 76 135 - -
Phac9g00312 275 MobiDBLite consensus disorder prediction 17 33 - -
Phac9g00312 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Phac9g00312 275 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Phac9g00312 275 MobiDBLite consensus disorder prediction 1 57 - -
Phac9g00312 275 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 275 IPR044246 GO:0009788
Phac9g00312 275 SUPERFAMILY beta-beta-alpha zinc fingers 89 119 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00312 Phac-Chr9 1983786 1985188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00312 15 275 C2H2 Transcription Factor Family AT5G10970 37.276 3.32e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac9g00312 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00312 - - vra:106761491 384.8