Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00311 ATGACTGTGGAAAAGAGAATGGGTGATTCCGGCGAAGAGTTTCCCGTCGGAATGCGTGTGCTCGCCGTGGATGATAACCCCATCTGCCTAATGGTTTTGGAAAATCTCCTACGGAAATGTCAATATCATGTAACTACAACAAATCAAGCAATAACAGCGTTGACGCTGTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCAAATGGTGATACGAAGCTGGTGATGAAAGGGATTTCTCATGGAGCCTGTGATTATCTGCTGAAACCCGTGAGAATGGAGGAGCTCAAGAACATCTGGCAGCATGTAATCAGAAGGAAGAAGTTTGACTCAAAGGAGAAGAACCAAACAAGCAACTTAGACAAACCCACTTCTGATAGTGGCAATGGACACGGATCATCAGGAGCTGTAAATTCAGATCAAAATGAGAAGCTGACTAAGAAACGGAAGGATCAAGATGAAGATGAAGATGAGGAGCAGGAGAATGATCATGACAATGAGGACCCGTCATCCCAGAAGAAACCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCGAGCCATCTCCAGAAGTATAGGCTTTATCTGAAAAGAATTAGTTGCGTGGCTAACCAACAGGCTAATATGGTGGCGGCCTTAGGGGGTGCAGATCCATCCTATTTGAGAATGAGTTCTGTGAGTGGGGTTGGACATTTACAAACATTGAGTGGTTCTGGACAGCTTCATAACAATGGTTTTAGATCCTTTCCAACTGGTGGCATAATTAATAGGTTGAACACTCCTGCTGGTTTGAATGTGCATGGATTTCCCTCTGGAGTTCTTCAGTTGAGTCAGTCACAAAATTTAAACAACACTAATAACGATCATCTGAAGTTCCGGTCAGCCATGGCTCCTGTTAATCAGAATGGTGTTCAGGGAATGCCAATGCCTGTTCAAAACAATAACAGTGTCATTTCCGTTCAAAATTTGACCGCTGTTTTTAACGCCAAAACAAATTTTCCCATCTCAAATAAACTCCCAGAACCAAGGCCAAAAATAACATCTGTCTCTCGCACTTCAGACGTAGGTATCGCAAACAATGCCTTGATGTTGGAACCATGCCCTCAAGGCACACAGGGGAGTGTAAGCATTGAAGCTTTATCTTCTTCAGTAGCCTCTCAACATTCAGAATTTTCTTTGCCTTTGCTGGATCAAGGTAGATATAATGATAGTTGGACAAGAGCTGTGCAGCCATCTGTGATACAGACAAACTCTTACCCTCCTAGTGAATGTTTTAGACAGACAAATATACCTCCTCCAGAGAATATGGCTTCTATACCCCTGCAAGGTGGGAATCTTAGTGGTCCATCCATCACTTCACTGTCCAGGCAATCCCATGATTCAATAACAGATATGAACTCTGAAGGAGTGACTTTAACTAACAGACCTGGGAATATAAGCAGTAATGTGCCATTTCAAGGGTGGGATGACCGTTATCAAGATGCTACCCATCATTCAAATAATATATTTGCATCAATTAACTCACTGACTCCAGTCAATGGTGCTGCTGTTCCAGTGGGCCATGGAGCAACAAACTCAGCCTCACATAGAAACTTAGACTTTAATTTTTGTGATCCCTTACAAATGAAGCATGATGGGTTTGTGGAATTAACTGAAGAGATCTTATCTAAACAACATCAGGGGAATATTCTGAACCAGCAGAAGTCTCAACATAGTCATTTCTCTAGTAATCTTGGTTCATTGGAAGACTTGGTCAGTTCAATGATGAAACAGGTACTGACATTTATAAATATACAAGGTTTTCATGAAATGTTTCTGTATTTCTTTTAA 2019 0.4195 MTVEKRMGDSGEEFPVGMRVLAVDDNPICLMVLENLLRKCQYHVTTTNQAITALTLLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNQTSNLDKPTSDSGNGHGSSGAVNSDQNEKLTKKRKDQDEDEDEEQENDHDNEDPSSQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADPSYLRMSSVSGVGHLQTLSGSGQLHNNGFRSFPTGGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNTNNDHLKFRSAMAPVNQNGVQGMPMPVQNNNSVISVQNLTAVFNAKTNFPISNKLPEPRPKITSVSRTSDVGIANNALMLEPCPQGTQGSVSIEALSSSVASQHSEFSLPLLDQGRYNDSWTRAVQPSVIQTNSYPPSECFRQTNIPPPENMASIPLQGGNLSGPSITSLSRQSHDSITDMNSEGVTLTNRPGNISSNVPFQGWDDRYQDATHHSNNIFASINSLTPVNGAAVPVGHGATNSASHRNLDFNFCDPLQMKHDGFVELTEEILSKQHQGNILNQQKSQHSHFSSNLGSLEDLVSSMMKQVLTFINIQGFHEMFLYFF* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00311 672 SUPERFAMILY CheY-like 17 142 IPR011006 -
Phac9g00311 672 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Phac9g00311 672 Gene3D - 17 153 - -
Phac9g00311 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 317 IPR045279 GO:0009736
Phac9g00311 672 CDD REC_typeB_ARR-like 20 134 - -
Phac9g00311 672 SMART REC_2 18 130 IPR001789 GO:0000160
Phac9g00311 672 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Phac9g00311 672 MobiDBLite consensus disorder prediction 150 171 - -
Phac9g00311 672 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Phac9g00311 672 Gene3D - 200 263 - -
Phac9g00311 672 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Phac9g00311 672 PIRSF RR_ARR_type-B 1 665 IPR017053 GO:0003677|GO:0003700|GO:0009736
Phac9g00311 672 Coils Coil 172 192 - -
Phac9g00311 672 FunFam Two-component response regulator 200 263 - -
Phac9g00311 672 SUPERFAMILY Homeodomain-like 202 261 IPR009057 -
Phac9g00311 672 MobiDBLite consensus disorder prediction 140 206 - -
Phac9g00311 672 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00311 Phac-Chr9 1963957 1968811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00311 1 434 Response Regulator Gene Family AT2G25180 53.084 1.77e-130 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phac9g00311 Response_reg 1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00311 - K14491 gmx:100809002 1079.7