Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00310 ATGACTGTGGAAAAGAGAATGGGTGATTCCGGCGAAGAGTTTCCCGTCGGAATGCGTGTGCTCGCCGTGGATGATAACCCCATCTGCCTAATGGTTTTGGAAAATCTCCTACGGAAATGTCAATATCATGTAACTACAACAAATCAAGCAATAACAGCGTTGACGCTGTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCAAATGGTGATACGAAGCTGGTGATGAAAGGGATTTCTCATGGAGCCTGTGATTATCTGCTGAAACCCGTGAGAATGGAGGAGCTCAAGAACATCTGGCAGCATGTAATCAGAAGGAAGAAGTTTGACTCAAAGGAGAAGAACCAAACAAGCAACTTAGACAAACCCACTTCTGATAGTGGCAATGGACACGGATCATCAGGAGCTGTAAATTCAGATCAAAATGAGAAGCTGACTAAGAAACGGAAGGATCAAGATGAAGATGAAGATGAGGAGCAGGAGAATGATCATGACAATGAGGACCCGTCATCCCAGAAGAAACCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCGAGCCATCTCCAGAAGTATAGGCTTTATCTGAAAAGAATTAGTTGCGTGGCTAACCAACAGGCTAATATGGTGGCGGCCTTAGGGGGTGCAGATCCATCCTATTTGAGAATGAGTTCTGTGAGTGGGGTTGGACATTTACAAACATTGAGTGGTTCTGGACAGCTTCATAACAATGGTTTTAGATCCTTTCCAACTGGTGGCATAATTAATAGGTTGAACACTCCTGCTGGTTTGAATGTGCATGGATTTCCCTCTGGAGTTCTTCAGTTGAGTCAGTCACAAAATTTAAACAACACTAATAACGATCATCTGAAGTTCCGGTCAGCCATGGCTCCTGTTAATCAGAATGGTGTTCAGGGAATGCCAATGCCTGTTCAAAACAATAACAGTGTCATTTCCGTTCAAAATTTGACCGCTGTTTTTAACGCCAAAACAAATTTTCCCATCTCAAATAAACTCCCAGAACCAAGGCCAAAAATAACATCTGTCTCTCGCACTTCAGACGTAGGTATCGCAAACAATGCCTTGATGTTGGAACCATGCCCTCAAGGCACACAGGGGAGTGTAAGCATTGAAGCTTTATCTTCTTCAGTAGCCTCTCAACATTCAGAATTTTCTTTGCCTTTGCTGGATCAAGGTAGATATAATGATAGTTGGACAAGAGCTGTGCAGCCATCTGTGATACAGACAAACTCTTACCCTCCTAGTGAATGTTTTAGACAGACAAATATACCTCCTCCAGAGAATATGGCTTCTATACCCCTGCAAGGTGGGAATCTTAGTGGTCCATCCATCACTTCACTGTCCAGGCAATCCCATGATTCAATAACAGATATGAACTCTGAAGGAGTGACTTTAACTAACAGACCTGGGAATATAAGCAGTAATGTGCCATTTCAAGGGTGGGATGACCGTTATCAAGATGCTACCCATCATTCAAATAATATATTTGCATCAATTAACTCACTGACTCCAGTCAATGGTGCTGCTGTTCCAGTGGGCCATGGAGCAACAAACTCAGCCTCACATAGAAACTTAGACTTTAATTTTTGTGATCCCTTACAAATGAAGCATGATGGGTTTGTGGAATTAACTGAAGAGATCTTATCTAAACAACATCAGGGGAATATTCTGAACCAGCAGAAGTCTCAACATAGTCATTTCTCTAGTAATCTTGGTTCATTGGAAGACTTGGTCAGTTCAATGATGAAACAGGAGAAAGATAGGCTGAAATTATTGGATGGAAACCTCATTTGCGATAATTACTCTGGTGGATTATCTATGTGA 2034 0.4228 MTVEKRMGDSGEEFPVGMRVLAVDDNPICLMVLENLLRKCQYHVTTTNQAITALTLLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNQTSNLDKPTSDSGNGHGSSGAVNSDQNEKLTKKRKDQDEDEDEEQENDHDNEDPSSQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADPSYLRMSSVSGVGHLQTLSGSGQLHNNGFRSFPTGGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNTNNDHLKFRSAMAPVNQNGVQGMPMPVQNNNSVISVQNLTAVFNAKTNFPISNKLPEPRPKITSVSRTSDVGIANNALMLEPCPQGTQGSVSIEALSSSVASQHSEFSLPLLDQGRYNDSWTRAVQPSVIQTNSYPPSECFRQTNIPPPENMASIPLQGGNLSGPSITSLSRQSHDSITDMNSEGVTLTNRPGNISSNVPFQGWDDRYQDATHHSNNIFASINSLTPVNGAAVPVGHGATNSASHRNLDFNFCDPLQMKHDGFVELTEEILSKQHQGNILNQQKSQHSHFSSNLGSLEDLVSSMMKQEKDRLKLLDGNLICDNYSGGLSM* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00310 677 SUPERFAMILY CheY-like 17 142 IPR011006 -
Phac9g00310 677 PIRSF RR_ARR_type-B 1 674 IPR017053 GO:0003677|GO:0003700|GO:0009736
Phac9g00310 677 CDD REC_typeB_ARR-like 20 134 - -
Phac9g00310 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 374 IPR045279 GO:0009736
Phac9g00310 677 SMART REC_2 18 130 IPR001789 GO:0000160
Phac9g00310 677 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Phac9g00310 677 MobiDBLite consensus disorder prediction 150 171 - -
Phac9g00310 677 FunFam Two-component response regulator 200 263 - -
Phac9g00310 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Phac9g00310 677 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Phac9g00310 677 Gene3D - 200 263 - -
Phac9g00310 677 Coils Coil 172 192 - -
Phac9g00310 677 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Phac9g00310 677 Gene3D - 17 153 - -
Phac9g00310 677 MobiDBLite consensus disorder prediction 140 206 - -
Phac9g00310 677 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Phac9g00310 677 SUPERFAMILY Homeodomain-like 202 261 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00310 Phac-Chr9 1963957 1968811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00310 1 434 Response Regulator Gene Family AT2G25180 53.084 1.76e-130 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phac9g00310 Response_reg 1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00310 - K14491 gmx:100809002 1118.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g00310 9 1963957 1968811 Phac9g00310 9 1963957 1968811 ECH