Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00308 ATGTTGCCACGGATTAACTACATCGTGCCGTTCTTCTTCTTTACTTTGTTCGTTTCAGTGGCGGACTGTGTGCGGAATTTTGCGCACATTTTTAGATTTCTATCATTTTGGCAGAAGATGAGTAGTTTGGTGGAGAGGCTTCGTGTTAGATCAGATCGCAGGCCAATTTATAATCTTGATGAGTCAGATGACGATGCTGATTTTTTGCCAAGAAAATCCGGGACAACACAGGAAAAGTTAGAGAGAATAGTGAGAAGTGATGCGAAAGAGGATTTATGTCAAGCCTGTGGTGAAAATCAAAATCTTGTGAGTTGTGAAACCTGCACATATGCTTACCATCCTAGGTGTTTACTTCCACCACTTAAAGGCCCCCTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGACAAGATATTAGATTGTGAGATGCGACCTACTACAGCTGCTGACAATGATGCCACACAATTAGGGTCAAAACAAATTTTTGTCAAACAATACCTTGTTAAGTGGAAGGGCCTATCATATTTGCATTGCACATGGGTGCCGGAGAAAGAGTTTCTGAAGGCATTTAAGACTCATCCTCGTCTAAAGACAAAGGTGAACAACTTCCATCAGAAAATGGCATCTGTCAATACTTCTGATGATGACTTTGTTGCCATTCGACCAGAATGGACTACAGTTGACCGAGTACTTTCTTGCAGGGGTGATGACGACGAGAGAGAATATCTTGTGAAGTGGAAGGAGCTTCCATATGACGAGTGCTATTGGGAGTTTGAATCAGATATTTCTGCATTTCAGCCTGAAATAGAAAGATTCAATAGATTTCGGTCTAGGTCCAGTAAATTTTCTTCCAGTAAACATAAACAGAGTGTTAAGGATGATACTGAATTGAAGAAACAGCAGAAAGAATTTCAACATTACGAACACAGCCCCGAGTTTCTCTCAGGTACATTGCACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGGCTTGGCAAAACCATACAAAGTATTGCTTTCCTGGCATCCCTTTTTGAAGAGGGTGTCTTCCCACATCTGGTGGTTGCTCCACTTTCAACTCTGCGGAATTGGGAACGTGAATTCGCAACATGGGCACCTCATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTAATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCAGCTAATTAGTGAAAACAAGCAAGAGAGGATTAAGTTTGATGTTCTTTTGACATCGTATGAGATGATAAACTTTGACACAACATCACTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTTAAAAATAAAGATTCAAAATTATTTTCCTCACTGAAGCAATATTCTAGCAGGCATCGTGTTCTCTTGACAGGAACTCCACTTCAGAACAACTTGGATGAGCTTTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAGGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTCTTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGTGTTGAGTTGAGCAGCAAACAGAAAGAATATTATAAGGCGATTTTAACCCGCAATTATCAGATATTAACTCGTCGTGGTGGTGCTCAGATTTCTCTTATCAATGTTGTTATGGAATTGAGGAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTGGAACCAGATATTGATGACGCAAAAGAAGCATACAAACAACTATTGGAATCGTCAGGGAAGCTGCAATTGCTGGACAAGATGATGGTCAAACTTAAAGAGCAAGGACACAGAGTCCTTATATATTCTCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTACTTACAAGAATTGGCAGTATGAAAGGATTGATGGCAAAGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGATTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGACTCGGGATAAACCTTGCAACTGCTGACACGGTTGTTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCACAGACTCGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACATCTAGTTGTGGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGACATGGATCACAGGAGTTATTTGCTGATGAGAATGATGAAGCCGGAAAATCCCGCCAAATCCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCTACTTTGGATGATGAGGAAGAAGATGGATTTCTTAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAAGCTGCAGCAGAGGAGGCTGCCCAAAAAAGAGCATTGGAGAACCTAAACAATTCAGAAAGAACACATTTCTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCATTGGGAAAAGGGAAGCGAAATCGGAAGCTGATGGTTTCCGTGGAGGAGGATGACCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGATAATTATGAAGCAGAGCTTACCGATGGCGATTCAAATTCCACTGGAACTGGAACTACTACTGCCAGAAGGCCTTACAAGAAAAAAGCTCGTACAGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGTATGAAACAGAAGACTTATGAAGAAATTAAAGATTATGGAACCCTTTTCTTGTCCCACATTGCTGAAGATATAACTGAATCATCTACATTCACAGATGGTGTACCAAAAGACGGACTACGAATCCAAGATGTACTTGTAAGGATTGCAGTTCTACTCTTGATAAGGGACAAGGTGAAGTTTGCATCACAACATCCTCAAACTTCATTGTTTTCAGATGACATCCTATTACGCTATCCAGGTTTGAAGGGTGCGAAGATATGGAAGGAGGATCATGATTTGGTTTTGTTGCGTTCCGTTTTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGACAAGGATCTGAAAATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTTATAAACTTACCAGTTCCAGGACAAGTTGGCTCTCAGGCACAAAATGGTACAAATTTGACAAATGCCGAAGTACCCAACAGTCAATCCAGGGAAAATGGTGGAAGCGATATACCAGCTGATGGTGTGCAAGGTTCTGGTGATGCCAGGAATCAAGCACAATTATATCAAGACTCCTCCATATTGTATCATTTTAGAGACATGCAGAGAAGACAAGTTGAGTTCATAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGGCTTAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAATCAAATGACGAACTTAAAAGTGAATCCAAGGCTCCTAAATTAAGGGAAAATGAATCCCAAATAATTGATCAACTACCGCAAGTAGAAACAATAGCTTCAGAAGAAATTTCGGCTGTTTGTGATAGTGATCCCAATCGATTGGAGTTAGTTCGTCTTTACAATGAGATGTGCAAGGTAGTGGAGGAAAACCCCATGGATTTAGTTCAAACTTCTTTGGCAAGAGAACCAGCAGAGCTTCATGTAGGGAAGAATTTCCCACGACTAGAAACCATTTGCGAAGACATCAACAGAATTCTAACACCCACACAAGAACAATCTGCGGCAGATATTCCAAAGTCAAATTCAGACAACAAATCAGAGGCTATGTCGTACGGCGAGATTTTGGTCGCCAAATCACCTCCAAACCCTCAAGATGCTGGCAAACCTGAAGACTCGGCAAACAATGGGAGTAAAGACATGATAATAGAATCTGAACCTATAAAAGCAAGCTGCTCAAGCCTGGTAAAAGATGAGAATGAAATTCAGACTTCTCCGGATAAAGAGAAAAGTAATACAGAAATGGATGAAACTATGACTGATGCTCAGTAG 4377 0.406 MLPRINYIVPFFFFTLFVSVADCVRNFAHIFRFLSFWQKMSSLVERLRVRSDRRPIYNLDESDDDADFLPRKSGTTQEKLERIVRSDAKEDLCQACGENQNLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATQLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASVNTSDDDFVAIRPEWTTVDRVLSCRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRFRSRSSKFSSSKHKQSVKDDTELKKQQKEFQHYEHSPEFLSGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVFPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQLISENKQERIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRHGSQELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEEEDGFLKAFKVANFEYVDEAEAAAEEAAQKRALENLNNSERTHFWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTGTTTARRPYKKKARTDSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITESSTFTDGVPKDGLRIQDVLVRIAVLLLIRDKVKFASQHPQTSLFSDDILLRYPGLKGAKIWKEDHDLVLLRSVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQVGSQAQNGTNLTNAEVPNSQSRENGGSDIPADGVQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKSNDELKSESKAPKLRENESQIIDQLPQVETIASEEISAVCDSDPNRLELVRLYNEMCKVVEENPMDLVQTSLAREPAELHVGKNFPRLETICEDINRILTPTQEQSAADIPKSNSDNKSEAMSYGEILVAKSPPNPQDAGKPEDSANNGSKDMIIESEPIKASCSSLVKDENEIQTSPDKEKSNTEMDETMTDAQ* 1459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00308 1458 Gene3D - 1076 1254 - -
Phac9g00308 1458 Pfam CHD subfamily II, DUF1087 882 940 IPR009463 -
Phac9g00308 1458 SMART chromo_7 138 201 IPR000953 -
Phac9g00308 1458 SMART chromo_7 229 283 IPR000953 -
Phac9g00308 1458 Gene3D - 321 566 IPR038718 -
Phac9g00308 1458 MobiDBLite consensus disorder prediction 1176 1198 - -
Phac9g00308 1458 SMART DUF1086_2 953 1109 IPR009462 GO:0003677|GO:0006338
Phac9g00308 1458 Coils Coil 876 896 - -
Phac9g00308 1458 SMART DUF1087_2 877 943 IPR009463 -
Phac9g00308 1458 MobiDBLite consensus disorder prediction 1257 1282 - -
Phac9g00308 1458 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 650 811 IPR001650 -
Phac9g00308 1458 SUPERFAMILY Chromo domain-like 105 216 IPR016197 -
Phac9g00308 1458 MobiDBLite consensus disorder prediction 1259 1280 - -
Phac9g00308 1458 Pfam CHD subfamily II, SANT-like domain 973 1106 IPR009462 GO:0003677|GO:0006338
Phac9g00308 1458 CDD CD2_tandem 229 278 - -
Phac9g00308 1458 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 336 522 IPR014001 -
Phac9g00308 1458 Pfam Chromo (CHRromatin Organisation MOdifier) domain 141 196 IPR023780 -
Phac9g00308 1458 Pfam Chromo (CHRromatin Organisation MOdifier) domain 232 280 IPR023780 -
Phac9g00308 1458 MobiDBLite consensus disorder prediction 1393 1458 - -
Phac9g00308 1458 MobiDBLite consensus disorder prediction 942 992 - -
Phac9g00308 1458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 136 IPR013083 -
Phac9g00308 1458 Gene3D - 137 227 - -
Phac9g00308 1458 ProSitePatterns Zinc finger PHD-type signature. 93 134 IPR019786 -
Phac9g00308 1458 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 86 1421 - -
Phac9g00308 1458 MobiDBLite consensus disorder prediction 1365 1384 - -
Phac9g00308 1458 CDD SF2_C_SNF 645 771 - -
Phac9g00308 1458 Gene3D - 228 280 - -
Phac9g00308 1458 SMART ultradead3 320 533 IPR014001 -
Phac9g00308 1458 ProSiteProfiles Chromo and chromo shadow domain profile. 139 221 IPR000953 -
Phac9g00308 1458 CDD CD1_tandem 137 210 - -
Phac9g00308 1458 SMART PHD_3 92 135 IPR001965 -
Phac9g00308 1458 MobiDBLite consensus disorder prediction 1436 1451 - -
Phac9g00308 1458 MobiDBLite consensus disorder prediction 961 975 - -
Phac9g00308 1458 Gene3D - 567 791 IPR027417 -
Phac9g00308 1458 SUPERFAMILY Chromo domain-like 224 281 IPR016197 -
Phac9g00308 1458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 557 IPR027417 -
Phac9g00308 1458 ProSiteProfiles Zinc finger PHD-type profile. 90 137 IPR019787 -
Phac9g00308 1458 SMART helicmild6 676 760 IPR001650 -
Phac9g00308 1458 Pfam PHD-finger 93 135 IPR019787 -
Phac9g00308 1458 MobiDBLite consensus disorder prediction 942 960 - -
Phac9g00308 1458 ProSiteProfiles Chromo and chromo shadow domain profile. 231 293 IPR000953 -
Phac9g00308 1458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 559 810 IPR027417 -
Phac9g00308 1458 Pfam SNF2-related domain 344 624 IPR000330 GO:0005524|GO:0140658
Phac9g00308 1458 MobiDBLite consensus disorder prediction 1176 1211 - -
Phac9g00308 1458 Pfam Helicase conserved C-terminal domain 647 760 IPR001650 -
Phac9g00308 1458 ProSiteProfiles Rubredoxin-like domain profile. 100 144 IPR024934 GO:0005506
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00308 Phac-Chr9 1940636 1962587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00308 287 787 RAD5 or RAD16-like Gene Family AT1G02670 23.196 1.11e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac9g00308 SNF2_N 3.7e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00308 K11643 - gmx:100790230 2548.47