Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00306 ATGGTTTTTTCATACTGTTTTCCTCTAAATTCATTCAGTGCCTTCAGACAACTTTTTGAGAGCAATTGGACCATAATCGTGTTCGTAAGGAACATAAATAGTTACGGAAATCTATTTGTAGGATTTCTATCATTTTGGCAGAAGATGAGTAGTTTGGTGGAGAGGCTTCGTGTTAGATCAGATCGCAGGCCAATTTATAATCTTGATGAGTCAGATGACGATGCTGATTTTTTGCCAAGAAAATCCGGGACAACACAGGAAAAGTTAGAGAGAATAGTGAGAAGTGATGCGAAAGAGGATTTATGTCAAGCCTGTGGTGAAAATCAAAATCTTGTGAGTTGTGAAACCTGCACATATGCTTACCATCCTAGGTGTTTACTTCCACCACTTAAAGGCCCCCTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGACAAGATATTAGATTGTGAGATGCGACCTACTACAGCTGCTGACAATGATGCCACACAATTAGGGTCAAAACAAATTTTTGTCAAACAATACCTTGTTAAGTGGAAGGGCCTATCATATTTGCATTGCACATGGGTGCCGGAGAAAGAGTTTCTGAAGGCATTTAAGACTCATCCTCGTCTAAAGACAAAGGTGAACAACTTCCATCAGAAAATGGCATCTGTCAATACTTCTGATGATGACTTTGTTGCCATTCGACCAGAATGGACTACAGTTGACCGAGTACTTTCTTGCAGGGGTGATGACGACGAGAGAGAATATCTTGTGAAGTGGAAGGAGCTTCCATATGACGAGTGCTATTGGGAGTTTGAATCAGATATTTCTGCATTTCAGCCTGAAATAGAAAGATTCAATAGATTTCGGTCTAGGTCCAGTAAATTTTCTTCCAGTAAACATAAACAGAGTGTTAAGGATGATACTGAATTGAAGAAACAGCAGAAAGAATTTCAACATTACGAACACAGCCCCGAGTTTCTCTCAGGTACATTGCACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGGCTTGGCAAAACCATACAAAGTATTGCTTTCCTGGCATCCCTTTTTGAAGAGGGTGTCTTCCCACATCTGGTGGTTGCTCCACTTTCAACTCTGCGGAATTGGGAACGTGAATTCGCAACATGGGCACCTCATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTAATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCAGCTAATTAGTGAAAACAAGCAAGAGAGGATTAAGTTTGATGTTCTTTTGACATCGTATGAGATGATAAACTTTGACACAACATCACTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTTAAAAATAAAGATTCAAAATTATTTTCCTCACTGAAGCAATATTCTAGCAGGCATCGTGTTCTCTTGACAGGAACTCCACTTCAGAACAACTTGGATGAGCTTTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAGGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTCTTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGTGTTGAGTTGAGCAGCAAACAGAAAGAATATTATAAGGCGATTTTAACCCGCAATTATCAGATATTAACTCGTCGTGGTGGTGCTCAGATTTCTCTTATCAATGTTGTTATGGAATTGAGGAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTGGAACCAGATATTGATGACGCAAAAGAAGCATACAAACAACTATTGGAATCGTCAGGGAAGCTGCAATTGCTGGACAAGATGATGGTCAAACTTAAAGAGCAAGGACACAGAGTCCTTATATATTCTCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTACTTACAAGAATTGGCAGTATGAAAGGATTGATGGCAAAGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGATTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGACTCGGGATAAACCTTGCAACTGCTGACACGGTTGTTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCACAGACTCGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACATCTAGTTGTGGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGACATGGATCACAGGAGTTATTTGCTGATGAGAATGATGAAGCCGGAAAATCCCGCCAAATCCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCTACTTTGGATGATGAGGAAGAAGATGGATTTCTTAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAAGCTGCAGCAGAGGAGGCTGCCCAAAAAAGAGCATTGGAGAACCTAAACAATTCAGAAAGAACACATTTCTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCATTGGGAAAAGGGAAGCGAAATCGGAAGCTGATGGTTTCCGTGGAGGAGGATGACCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGATAATTATGAAGCAGAGCTTACCGATGGCGATTCAAATTCCACTGGAACTGGAACTACTACTGCCAGAAGGCCTTACAAGAAAAAAGCTCGTACAGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGTATGAAACAGAAGACTTATGAAGAAATTAAAGATTATGGAACCCTTTTCTTGTCCCACATTGCTGAAGATATAACTGAATCATCTACATTCACAGATGGTGTACCAAAAGACGGACTACGAATCCAAGATGTACTTGTAAGGATTGCAGTTCTACTCTTGATAAGGGACAAGGTGAAGTTTGCATCACAACATCCTCAAACTTCATTGTTTTCAGATGACATCCTATTACGCTATCCAGGTTTGAAGGGTGCGAAGATATGGAAGGAGGATCATGATTTGGTTTTGTTGCGTTCCGTTTTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGACAAGGATCTGAAAATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTTATAAACTTACCAGTTCCAGGACAAGTTGGCTCTCAGGCACAAAATGGTACAAATTTGACAAATGCCGAAGTACCCAACAGTCAATCCAGGGAAAATGGTGGAAGCGATATACCAGCTGATGGTGTGCAAGGTTCTGGTGATGCCAGGAATCAAGCACAATTATATCAAGACTCCTCCATATTGTATCATTTTAGAGACATGCAGAGAAGACAAGTTGAGTTCATAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGGCTTAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAATCAAATGACGAACTTAAAAGTGAATCCAAGGCTCCTAAATTAAGGGAAAATGAATCCCAAATAATTGATCAACTACCGCAAGTAGAAACAATAGCTTCAGAAGAAATTTCGGCTGTTTGTGATAGTGATCCCAATCGATTGGAGTTAGTTCGTCTTTACAATGAGATGTGCAAGGTAGTGGAGGAAAACCCCATGGATTTAGTTCAAACTTCTTTGGCAAGAGAACCAGCAGAGCTTCATGTAGGGAAGAATTTCCCACGACTAGAAACCATTTGCGAAGACATCAACAGAATTCTAACACCCACACAAGAACAATCTGCGGCAGATATTCCAAAGTCAAATTCAGACAACAAATCAGAGGCTATGTCGTACGGCGAGATTTTGGTCGCCAAATCACCTCCAAACCCTCAAGATGCTGGCAAACCTGAAGACTCGGCAAACAATGGGAGTAAAGACATGATAATAGAATCTGAACCTATAAAAGCAAGCTGCTCAAGCCTGGTAAAAGATGAGAATGAAATTCAGACTTCTCCGGATAAAGAGAAAAGTAATACAGAAATGGATGAAACTATGACTGATGCTCAGTAG 4404 0.4035 MVFSYCFPLNSFSAFRQLFESNWTIIVFVRNINSYGNLFVGFLSFWQKMSSLVERLRVRSDRRPIYNLDESDDDADFLPRKSGTTQEKLERIVRSDAKEDLCQACGENQNLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATQLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASVNTSDDDFVAIRPEWTTVDRVLSCRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRFRSRSSKFSSSKHKQSVKDDTELKKQQKEFQHYEHSPEFLSGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVFPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQLISENKQERIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRHGSQELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEEEDGFLKAFKVANFEYVDEAEAAAEEAAQKRALENLNNSERTHFWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTGTTTARRPYKKKARTDSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITESSTFTDGVPKDGLRIQDVLVRIAVLLLIRDKVKFASQHPQTSLFSDDILLRYPGLKGAKIWKEDHDLVLLRSVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQVGSQAQNGTNLTNAEVPNSQSRENGGSDIPADGVQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKSNDELKSESKAPKLRENESQIIDQLPQVETIASEEISAVCDSDPNRLELVRLYNEMCKVVEENPMDLVQTSLAREPAELHVGKNFPRLETICEDINRILTPTQEQSAADIPKSNSDNKSEAMSYGEILVAKSPPNPQDAGKPEDSANNGSKDMIIESEPIKASCSSLVKDENEIQTSPDKEKSNTEMDETMTDAQ* 1468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00306 1467 SUPERFAMILY Chromo domain-like 114 225 IPR016197 -
Phac9g00306 1467 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 95 1430 - -
Phac9g00306 1467 MobiDBLite consensus disorder prediction 970 984 - -
Phac9g00306 1467 ProSitePatterns Zinc finger PHD-type signature. 102 143 IPR019786 -
Phac9g00306 1467 ProSiteProfiles Rubredoxin-like domain profile. 109 153 IPR024934 GO:0005506
Phac9g00306 1467 Pfam CHD subfamily II, SANT-like domain 982 1115 IPR009462 GO:0003677|GO:0006338
Phac9g00306 1467 MobiDBLite consensus disorder prediction 1185 1220 - -
Phac9g00306 1467 CDD SF2_C_SNF 654 780 - -
Phac9g00306 1467 CDD CD2_tandem 238 287 - -
Phac9g00306 1467 ProSiteProfiles Chromo and chromo shadow domain profile. 240 302 IPR000953 -
Phac9g00306 1467 Gene3D - 330 575 IPR038718 -
Phac9g00306 1467 Pfam SNF2-related domain 353 633 IPR000330 GO:0005524|GO:0140658
Phac9g00306 1467 SMART DUF1087_2 886 952 IPR009463 -
Phac9g00306 1467 SUPERFAMILY Chromo domain-like 233 290 IPR016197 -
Phac9g00306 1467 SMART DUF1086_2 962 1118 IPR009462 GO:0003677|GO:0006338
Phac9g00306 1467 MobiDBLite consensus disorder prediction 951 969 - -
Phac9g00306 1467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 819 IPR027417 -
Phac9g00306 1467 MobiDBLite consensus disorder prediction 1402 1467 - -
Phac9g00306 1467 CDD CD1_tandem 146 219 - -
Phac9g00306 1467 Gene3D - 576 800 IPR027417 -
Phac9g00306 1467 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 345 531 IPR014001 -
Phac9g00306 1467 MobiDBLite consensus disorder prediction 1445 1460 - -
Phac9g00306 1467 Gene3D - 1085 1263 - -
Phac9g00306 1467 SMART ultradead3 329 542 IPR014001 -
Phac9g00306 1467 SMART helicmild6 685 769 IPR001650 -
Phac9g00306 1467 ProSiteProfiles Chromo and chromo shadow domain profile. 148 230 IPR000953 -
Phac9g00306 1467 MobiDBLite consensus disorder prediction 1266 1291 - -
Phac9g00306 1467 Coils Coil 885 905 - -
Phac9g00306 1467 SMART PHD_3 101 144 IPR001965 -
Phac9g00306 1467 MobiDBLite consensus disorder prediction 1268 1289 - -
Phac9g00306 1467 Pfam Chromo (CHRromatin Organisation MOdifier) domain 150 205 IPR023780 -
Phac9g00306 1467 Pfam Chromo (CHRromatin Organisation MOdifier) domain 241 289 IPR023780 -
Phac9g00306 1467 Gene3D - 146 236 - -
Phac9g00306 1467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 566 IPR027417 -
Phac9g00306 1467 Pfam CHD subfamily II, DUF1087 891 949 IPR009463 -
Phac9g00306 1467 MobiDBLite consensus disorder prediction 1185 1207 - -
Phac9g00306 1467 Pfam PHD-finger 102 144 IPR019787 -
Phac9g00306 1467 ProSiteProfiles Zinc finger PHD-type profile. 99 146 IPR019787 -
Phac9g00306 1467 MobiDBLite consensus disorder prediction 951 1001 - -
Phac9g00306 1467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 145 IPR013083 -
Phac9g00306 1467 SMART chromo_7 147 210 IPR000953 -
Phac9g00306 1467 SMART chromo_7 238 292 IPR000953 -
Phac9g00306 1467 MobiDBLite consensus disorder prediction 1374 1393 - -
Phac9g00306 1467 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 659 820 IPR001650 -
Phac9g00306 1467 Pfam Helicase conserved C-terminal domain 656 769 IPR001650 -
Phac9g00306 1467 Gene3D - 237 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00306 Phac-Chr9 1940636 1962587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00306 296 796 RAD5 or RAD16-like Gene Family AT1G02670 23.196 1.32e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac9g00306 SNF2_N 3.7e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00306 K11643 - gmx:100790230 2548.47