Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00305 ATGAGTAGTTTGGTGGAGAGGCTTCGTGTTAGATCAGATCGCAGGCCAATTTATAATCTTGATGAGTCAGATGACGATGCTGATTTTTTGCCAAGAAAATCCGGGACAACACAGGAAAAGTTAGAGAGAATAGTGAGAAGTGATGCGAAAGAGGATTTATGTCAAGCCTGTGGTGAAAATCAAAATCTTGTGAGTTGTGAAACCTGCACATATGCTTACCATCCTAGGTGTTTACTTCCACCACTTAAAGGCCCCCTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGACAAGATATTAGATTGTGAGATGCGACCTACTACAGCTGCTGACAATGATGCCACACAATTAGGGTCAAAACAAATTTTTGTCAAACAATACCTTGTTAAGTGGAAGGGCCTATCATATTTGCATTGCACATGGGTGCCGGAGAAAGAGTTTCTGAAGGCATTTAAGACTCATCCTCGTCTAAAGACAAAGGTGAACAACTTCCATCAGAAAATGGCATCTGTCAATACTTCTGATGATGACTTTGTTGCCATTCGACCAGAATGGACTACAGTTGACCGAGTACTTTCTTGCAGGGGTGATGACGACGAGAGAGAATATCTTGTGAAGTGGAAGGAGCTTCCATATGACGAGTGCTATTGGGAGTTTGAATCAGATATTTCTGCATTTCAGCCTGAAATAGAAAGATTCAATAGATTTCGGTCTAGGTCCAGTAAATTTTCTTCCAGTAAACATAAACAGAGTGTTAAGGATGATACTGAATTGAAGAAACAGCAGAAAGAATTTCAACATTACGAACACAGCCCCGAGTTTCTCTCAGGTACATTGCACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGGCTTGGCAAAACCATACAAAGTATTGCTTTCCTGGCATCCCTTTTTGAAGAGGGTGTCTTCCCACATCTGGTGGTTGCTCCACTTTCAACTCTGCGGAATTGGGAACGTGAATTCGCAACATGGGCACCTCATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTAATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCAGCTAATTAGTGAAAACAAGCAAGAGAGGATTAAGTTTGATGTTCTTTTGACATCGTATGAGATGATAAACTTTGACACAACATCACTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTTAAAAATAAAGATTCAAAATTATTTTCCTCACTGAAGCAATATTCTAGCAGGCATCGTGTTCTCTTGACAGGAACTCCACTTCAGAACAACTTGGATGAGCTTTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAGGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTCTTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGTGTTGAGTTGAGCAGCAAACAGAAAGAATATTATAAGGCGATTTTAACCCGCAATTATCAGATATTAACTCGTCGTGGTGGTGCTCAGATTTCTCTTATCAATGTTGTTATGGAATTGAGGAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTGGAACCAGATATTGATGACGCAAAAGAAGCATACAAACAACTATTGGAATCGTCAGGGAAGCTGCAATTGCTGGACAAGATGATGGTCAAACTTAAAGAGCAAGGACACAGAGTCCTTATATATTCTCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTACTTACAAGAATTGGCAGTATGAAAGGATTGATGGCAAAGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGATTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGACTCGGGATAAACCTTGCAACTGCTGACACGGTTGTTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCACAGACTCGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACATCTAGTTGTGGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGACATGGATCACAGGAGTTATTTGCTGATGAGAATGATGAAGCCGGAAAATCCCGCCAAATCCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCTACTTTGGATGATGAGGAAGAAGATGGATTTCTTAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAAGCTGCAGCAGAGGAGGCTGCCCAAAAAAGAGCATTGGAGAACCTAAACAATTCAGAAAGAACACATTTCTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCATTGGGAAAAGGGAAGCGAAATCGGAAGCTGATGGTTTCCGTGGAGGAGGATGACCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGATAATTATGAAGCAGAGCTTACCGATGGCGATTCAAATTCCACTGGAACTGGAACTACTACTGCCAGAAGGCCTTACAAGAAAAAAGCTCGTACAGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGTATGAAACAGAAGACTTATGAAGAAATTAAAGATTATGGAACCCTTTTCTTGTCCCACATTGCTGAAGATATAACTGAATCATCTACATTCACAGATGGTGTACCAAAAGACGGACTACGAATCCAAGATGTACTTGTAAGGATTGCAGTTCTACTCTTGATAAGGGACAAGGTGAAGTTTGCATCACAACATCCTCAAACTTCATTGTTTTCAGATGACATCCTATTACGCTATCCAGGTTTGAAGGGTGCGAAGATATGGAAGGAGGATCATGATTTGGTTTTGTTGCGTTCCGTTTTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGACAAGGATCTGAAAATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTTATAAACTTACCAGTTCCAGGACAAGTTGGCTCTCAGGCACAAAATGGTACAAATTTGACAAATGCCGAAGTACCCAACAGTCAATCCAGGGAAAATGGTGGAAGCGATATACCAGCTGATGGTGTGCAAGGTTCTGGTGATGCCAGGAATCAAGCACAATTATATCAAGACTCCTCCATATTGTATCATTTTAGAGACATGCAGAGAAGACAAGTTGAGTTCATAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGGCTTAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAATCAAATGACGAACTTAAAAGTGAATCCAAGGCTCCTAAATTAAGGGAAAATGAATCCCAAATAATTGATCAACTACCGCAAGTAGAAACAATAGCTTCAGAAGAAATTTCGGCTGTTTGTGATAGTGATCCCAATCGATTGGAGTTAGTTCGTCTTTACAATGAGATGTGCAAGGTAGTGGAGGAAAACCCCATGGATTTAGTTCAAACTTCTTTGGCAAGAGAACCAGCAGAGCTTCATGTAGGGAAGAATTTCCCACGACTAGAAACCATTTGCGAAGACATCAACAGAATTCTAACACCCACACAAGAACAATCTGCGGCAGATATTCCAAAGTCAAATTCAGACAACAAATCAGAGGCTATGTCGTACGGCGAGATTTTGGTCGCCAAATCACCTCCAAACCCTCAAGATGCTGGCAAACCTGAAGACTCGGCAAACAATGGGAGTAAAGACATGATAATAGAATCTGAACCTATAAAAGCAAGCTGCTCAAGCCTGGTAAAAGATGAGAATGAAATTCAGACTTCTCCGGATAAAGAGAAAAGTAATACAGAAATGGATGAAACTATGACTGATGCTCAGTAG 4260 0.4056 MSSLVERLRVRSDRRPIYNLDESDDDADFLPRKSGTTQEKLERIVRSDAKEDLCQACGENQNLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATQLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASVNTSDDDFVAIRPEWTTVDRVLSCRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRFRSRSSKFSSSKHKQSVKDDTELKKQQKEFQHYEHSPEFLSGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVFPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQLISENKQERIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRHGSQELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEEEDGFLKAFKVANFEYVDEAEAAAEEAAQKRALENLNNSERTHFWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTGTTTARRPYKKKARTDSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITESSTFTDGVPKDGLRIQDVLVRIAVLLLIRDKVKFASQHPQTSLFSDDILLRYPGLKGAKIWKEDHDLVLLRSVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQVGSQAQNGTNLTNAEVPNSQSRENGGSDIPADGVQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKSNDELKSESKAPKLRENESQIIDQLPQVETIASEEISAVCDSDPNRLELVRLYNEMCKVVEENPMDLVQTSLAREPAELHVGKNFPRLETICEDINRILTPTQEQSAADIPKSNSDNKSEAMSYGEILVAKSPPNPQDAGKPEDSANNGSKDMIIESEPIKASCSSLVKDENEIQTSPDKEKSNTEMDETMTDAQ* 1420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00305 1419 SMART DUF1087_2 838 904 IPR009463 -
Phac9g00305 1419 MobiDBLite consensus disorder prediction 922 936 - -
Phac9g00305 1419 Gene3D - 98 188 - -
Phac9g00305 1419 MobiDBLite consensus disorder prediction 1137 1172 - -
Phac9g00305 1419 CDD CD2_tandem 190 239 - -
Phac9g00305 1419 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Phac9g00305 1419 Gene3D - 1037 1215 - -
Phac9g00305 1419 CDD CD1_tandem 98 171 - -
Phac9g00305 1419 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Phac9g00305 1419 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Phac9g00305 1419 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 772 IPR001650 -
Phac9g00305 1419 ProSiteProfiles Chromo and chromo shadow domain profile. 192 254 IPR000953 -
Phac9g00305 1419 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 47 1382 - -
Phac9g00305 1419 SMART DUF1086_2 914 1070 IPR009462 GO:0003677|GO:0006338
Phac9g00305 1419 MobiDBLite consensus disorder prediction 903 921 - -
Phac9g00305 1419 SMART helicmild6 637 721 IPR001650 -
Phac9g00305 1419 Pfam PHD-finger 54 96 IPR019787 -
Phac9g00305 1419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 518 IPR027417 -
Phac9g00305 1419 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Phac9g00305 1419 SMART ultradead3 281 494 IPR014001 -
Phac9g00305 1419 Coils Coil 837 857 - -
Phac9g00305 1419 SMART PHD_3 53 96 IPR001965 -
Phac9g00305 1419 MobiDBLite consensus disorder prediction 1218 1243 - -
Phac9g00305 1419 Pfam Helicase conserved C-terminal domain 608 721 IPR001650 -
Phac9g00305 1419 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Phac9g00305 1419 MobiDBLite consensus disorder prediction 1220 1241 - -
Phac9g00305 1419 Pfam CHD subfamily II, SANT-like domain 934 1067 IPR009462 GO:0003677|GO:0006338
Phac9g00305 1419 Pfam CHD subfamily II, DUF1087 843 901 IPR009463 -
Phac9g00305 1419 SUPERFAMILY Chromo domain-like 185 242 IPR016197 -
Phac9g00305 1419 MobiDBLite consensus disorder prediction 1397 1412 - -
Phac9g00305 1419 MobiDBLite consensus disorder prediction 1354 1419 - -
Phac9g00305 1419 MobiDBLite consensus disorder prediction 1137 1159 - -
Phac9g00305 1419 Pfam SNF2-related domain 305 585 IPR000330 GO:0005524|GO:0140658
Phac9g00305 1419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 97 IPR013083 -
Phac9g00305 1419 Gene3D - 528 752 IPR027417 -
Phac9g00305 1419 SMART chromo_7 190 244 IPR000953 -
Phac9g00305 1419 SMART chromo_7 99 162 IPR000953 -
Phac9g00305 1419 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Phac9g00305 1419 MobiDBLite consensus disorder prediction 1326 1345 - -
Phac9g00305 1419 CDD SF2_C_SNF 606 732 - -
Phac9g00305 1419 MobiDBLite consensus disorder prediction 903 953 - -
Phac9g00305 1419 Gene3D - 189 241 - -
Phac9g00305 1419 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 483 IPR014001 -
Phac9g00305 1419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 771 IPR027417 -
Phac9g00305 1419 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Phac9g00305 1419 Gene3D - 282 527 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00305 Phac-Chr9 1940636 1962587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00305 248 748 RAD5 or RAD16-like Gene Family AT1G02670 23.196 1.43e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac9g00305 SNF2_N 3.5e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00305 K11643 - gmx:100790230 2548.47