Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac9g00304 | ATGAGTAGTTTGGTGGAGAGGCTTCGTGTTAGATCAGATCGCAGGCCAATTTATAATCTTGATGAGTCAGATGACGATGCTGATTTTTTGCCAAGAAAATCCGGGACAACACAGGAAAAGTTAGAGAGAATAGTGAGAAGTGATGCGAAAGAGGATTTATGTCAAGCCTGTGGTGAAAATCAAAATCTTGTGAGTTGTGAAACCTGCACATATGCTTACCATCCTAGGTGTTTACTTCCACCACTTAAAGGCCCCCTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGACAAGATATTAGATTGTGAGATGCGACCTACTACAGCTGCTGACAATGATGCCACACAATTAGGGTCAAAACAAATTTTTGTCAAACAATACCTTGTTAAGTGGAAGGGCCTATCATATTTGCATTGCACATGGGTGCCGGAGAAAGAGTTTCTGAAGGCATTTAAGACTCATCCTCGTCTAAAGACAAAGGTGAACAACTTCCATCAGAAAATGGCATCTGTCAATACTTCTGATGATGACTTTGTTGCCATTCGACCAGAATGGACTACAGTTGACCGAGTACTTTCTTGCAGGGGTGATGACGACGAGAGAGAATATCTTGTGAAGTGGAAGGAGCTTCCATATGACGAGTGCTATTGGGAGTTTGAATCAGATATTTCTGCATTTCAGCCTGAAATAGAAAGATTCAATAGATTTCGGTCTAGGTCCAGTAAATTTTCTTCCAGTAAACATAAACAGAGTGTTAAGGATGATACTGAATTGAAGAAACAGCAGAAAGAATTTCAACATTACGAACACAGCCCCGAGTTTCTCTCAGGTACATTGCACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGGCTTGGCAAAACCATACAAAGTATTGCTTTCCTGGCATCCCTTTTTGAAGAGGGTGTCTTCCCACATCTGGTGGTTGCTCCACTTTCAACTCTGCGGAATTGGGAACGTGAATTCGCAACATGGGCACCTCATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTAATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCAGCTAATTAGTGAAAACAAGCAAGAGAGGATTAAGTTTGATGTTCTTTTGACATCGTATGAGATGATAAACTTTGACACAACATCACTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTTAAAAATAAAGATTCAAAATTATTTTCCTCACTGAAGCAATATTCTAGCAGGCATCGTGTTCTCTTGACAGGAACTCCACTTCAGAACAACTTGGATGAGCTTTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAGGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTCTTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGTGTTGAGTTGAGCAGCAAACAGAAAGAATATTATAAGGCGATTTTAACCCGCAATTATCAGATATTAACTCGTCGTGGTGGTGCTCAGATTTCTCTTATCAATGTTGTTATGGAATTGAGGAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTGGAACCAGATATTGATGACGCAAAAGAAGCATACAAACAACTATTGGAATCGTCAGGGAAGCTGCAATTGCTGGACAAGATGATGGTCAAACTTAAAGAGCAAGGACACAGAGTCCTTATATATTCTCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTACTTACAAGAATTGGCAGTATGAAAGGATTGATGGCAAAGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGATTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGACTCGGGATAAACCTTGCAACTGCTGACACGGTTGTTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCACAGACTCGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACATCTAGTTGTGGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGACATGGATCACAGGAGTTATTTGCTGATGAGAATGATGAAGCCGGAAAATCCCGCCAAATCCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCTACTTTGGATGATGAGGAAGAAGATGGATTTCTTAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAAGCTGCAGCAGAGGAGGCTGCCCAAAAAAGAGCATTGGAGAACCTAAACAATTCAGAAAGAACACATTTCTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCATTGGGAAAAGGGAAGCGAAATCGGAAGCTGATGGTTTCCGTGGAGGAGGATGACCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGATAATTATGAAGCAGAGCTTACCGATGGCGATTCAAATTCCACTGGAACTGGAACTACTACTGCCAGAAGGCCTTACAAGAAAAAAGCTCGTAATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGTATGAAACAGAAGACTTATGAAGAAATTAAAGATTATGGAACCCTTTTCTTGTCCCACATTGCTGAAGATATAACTGAATCATCTACATTCACAGATGGTGTACCAAAAGACGGACTACGAATCCAAGATGTACTTGTAAGGATTGCAGTTCTACTCTTGATAAGGGACAAGGTGAAGTTTGCATCACAACATCCTCAAACTTCATTGTTTTCAGATGACATCCTATTACGCTATCCAGGTTTGAAGGGTGCGAAGATATGGAAGGAGGATCATGATTTGGTTTTGTTGCGTTCCGTTTTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGACAAGGATCTGAAAATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTTATAAACTTACCAGTTCCAGGACAAGTTGGCTCTCAGGCACAAAATGGTACAAATTTGACAAATGCCGAAGTACCCAACAGTCAATCCAGGGAAAATGGTGGAAGCGATATACCAGCTGATGGTGTGCAAGGTTCTGGTGATGCCAGGAATCAAGCACAATTATATCAAGACTCCTCCATATTGTATCATTTTAGAGACATGCAGAGAAGACAAGTTGAGTTCATAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGGCTTAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAATCAAATGACGAACTTAAAAGTGAATCCAAGGCTCCTAAATTAAGGGAAAATGAATCCCAAATAATTGATCAACTACCGCAAGTAGAAACAATAGCTTCAGAAGAAATTTCGGCTGTTTGTGATAGTGATCCCAATCGATTGGAGTTAGTTCGTCTTTACAATGAGATGTGCAAGGTAGTGGAGGAAAACCCCATGGATTTAGTTCAAACTTCTTTGGCAAGAGAACCAGCAGAGCTTCATGTAGGGAAGAATTTCCCACGACTAGAAACCATTTGCGAAGACATCAACAGAATTCTAACACCCACACAAGAACAATCTGCGGCAGATATTCCAAAGTCAAATTCAGACAACAAATCAGAGGCTATGTCGTACGGCGAGATTTTGGTCGCCAAATCACCTCCAAACCCTCAAGATGCTGGCAAACCTGAAGACTCGGCAAACAATGGGAGTAAAGACATGATAATAGAATCTGAACCTATAAAAGCAAGCTGCTCAAGCCTGGTAAAAGATGAGAATGAAATTCAGACTTCTCCGGATAAAGAGAAAAGTAATACAGAAATGGATGAAACTATGACTGATGCTCAGTAG | 4257 | 0.4054 | MSSLVERLRVRSDRRPIYNLDESDDDADFLPRKSGTTQEKLERIVRSDAKEDLCQACGENQNLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATQLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASVNTSDDDFVAIRPEWTTVDRVLSCRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRFRSRSSKFSSSKHKQSVKDDTELKKQQKEFQHYEHSPEFLSGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVFPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQLISENKQERIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRHGSQELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEEEDGFLKAFKVANFEYVDEAEAAAEEAAQKRALENLNNSERTHFWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTGTTTARRPYKKKARNSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITESSTFTDGVPKDGLRIQDVLVRIAVLLLIRDKVKFASQHPQTSLFSDDILLRYPGLKGAKIWKEDHDLVLLRSVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQVGSQAQNGTNLTNAEVPNSQSRENGGSDIPADGVQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKSNDELKSESKAPKLRENESQIIDQLPQVETIASEEISAVCDSDPNRLELVRLYNEMCKVVEENPMDLVQTSLAREPAELHVGKNFPRLETICEDINRILTPTQEQSAADIPKSNSDNKSEAMSYGEILVAKSPPNPQDAGKPEDSANNGSKDMIIESEPIKASCSSLVKDENEIQTSPDKEKSNTEMDETMTDAQ* | 1419 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac9g00304 | 1418 | MobiDBLite | consensus disorder prediction | 903 | 952 | - | - | |
Phac9g00304 | 1418 | SMART | DUF1087_2 | 838 | 904 | IPR009463 | - | |
Phac9g00304 | 1418 | MobiDBLite | consensus disorder prediction | 922 | 936 | - | - | |
Phac9g00304 | 1418 | Gene3D | - | 98 | 188 | - | - | |
Phac9g00304 | 1418 | MobiDBLite | consensus disorder prediction | 1136 | 1158 | - | - | |
Phac9g00304 | 1418 | CDD | CD2_tandem | 190 | 239 | - | - | |
Phac9g00304 | 1418 | MobiDBLite | consensus disorder prediction | 1217 | 1242 | - | - | |
Phac9g00304 | 1418 | ProSitePatterns | Zinc finger PHD-type signature. | 54 | 95 | IPR019786 | - | |
Phac9g00304 | 1418 | MobiDBLite | consensus disorder prediction | 1219 | 1240 | - | - | |
Phac9g00304 | 1418 | CDD | CD1_tandem | 98 | 171 | - | - | |
Phac9g00304 | 1418 | MobiDBLite | consensus disorder prediction | 1396 | 1411 | - | - | |
Phac9g00304 | 1418 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 102 | 157 | IPR023780 | - | |
Phac9g00304 | 1418 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 193 | 241 | IPR023780 | - | |
Phac9g00304 | 1418 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 611 | 772 | IPR001650 | - | |
Phac9g00304 | 1418 | MobiDBLite | consensus disorder prediction | 1353 | 1418 | - | - | |
Phac9g00304 | 1418 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 192 | 254 | IPR000953 | - | |
Phac9g00304 | 1418 | MobiDBLite | consensus disorder prediction | 903 | 921 | - | - | |
Phac9g00304 | 1418 | SMART | helicmild6 | 637 | 721 | IPR001650 | - | |
Phac9g00304 | 1418 | Pfam | PHD-finger | 54 | 96 | IPR019787 | - | |
Phac9g00304 | 1418 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 270 | 518 | IPR027417 | - | |
Phac9g00304 | 1418 | ProSiteProfiles | Zinc finger PHD-type profile. | 51 | 98 | IPR019787 | - | |
Phac9g00304 | 1418 | SMART | ultradead3 | 281 | 494 | IPR014001 | - | |
Phac9g00304 | 1418 | MobiDBLite | consensus disorder prediction | 1325 | 1344 | - | - | |
Phac9g00304 | 1418 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 47 | 1381 | - | - | |
Phac9g00304 | 1418 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 520 | 771 | IPR027417 | - | |
Phac9g00304 | 1418 | Pfam | CHD subfamily II, SANT-like domain | 934 | 1066 | IPR009462 | GO:0003677|GO:0006338 | |
Phac9g00304 | 1418 | Coils | Coil | 837 | 857 | - | - | |
Phac9g00304 | 1418 | SMART | DUF1086_2 | 914 | 1069 | IPR009462 | GO:0003677|GO:0006338 | |
Phac9g00304 | 1418 | SMART | PHD_3 | 53 | 96 | IPR001965 | - | |
Phac9g00304 | 1418 | Pfam | Helicase conserved C-terminal domain | 608 | 721 | IPR001650 | - | |
Phac9g00304 | 1418 | ProSiteProfiles | Rubredoxin-like domain profile. | 61 | 105 | IPR024934 | GO:0005506 | |
Phac9g00304 | 1418 | Pfam | CHD subfamily II, DUF1087 | 843 | 901 | IPR009463 | - | |
Phac9g00304 | 1418 | Gene3D | - | 1036 | 1214 | - | - | |
Phac9g00304 | 1418 | SUPERFAMILY | Chromo domain-like | 185 | 242 | IPR016197 | - | |
Phac9g00304 | 1418 | Pfam | SNF2-related domain | 305 | 585 | IPR000330 | GO:0005524|GO:0140658 | |
Phac9g00304 | 1418 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 97 | IPR013083 | - | |
Phac9g00304 | 1418 | Gene3D | - | 528 | 752 | IPR027417 | - | |
Phac9g00304 | 1418 | SMART | chromo_7 | 190 | 244 | IPR000953 | - | |
Phac9g00304 | 1418 | SMART | chromo_7 | 99 | 162 | IPR000953 | - | |
Phac9g00304 | 1418 | SUPERFAMILY | Chromo domain-like | 66 | 177 | IPR016197 | - | |
Phac9g00304 | 1418 | CDD | SF2_C_SNF | 606 | 732 | - | - | |
Phac9g00304 | 1418 | Gene3D | - | 189 | 241 | - | - | |
Phac9g00304 | 1418 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 297 | 483 | IPR014001 | - | |
Phac9g00304 | 1418 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 100 | 182 | IPR000953 | - | |
Phac9g00304 | 1418 | MobiDBLite | consensus disorder prediction | 1136 | 1171 | - | - | |
Phac9g00304 | 1418 | Gene3D | - | 282 | 527 | IPR038718 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac9g00304 | Phac-Chr9 | 1940636 | 1962587 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac9g00304 | 248 | 748 | RAD5 or RAD16-like Gene Family | AT1G02670 | 23.196 | 1.28e-30 | 128 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Phac9g00304 | SNF2_N | 3.5e-66 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac9g00304 | K11643 | - | gmx:100790230 | 2544.23 |