Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00243 ATGGCTTCCAAGCTCTGCGACTCATGCAAGTCCGCCACCGCAACCTTGTATTGCCGCCCCGACGCCGCCTTTCTATGCGGAGCCTGCGACTCCAAGGTCCACGCCGCCAACAAGCTCGCCTCGCGCCACCCACGCGTAGCGCTCTGCGAGGTCTGCGAGCAGGCGCCCGCGCACGTCACCTGCAAGGCCGACGCCGCCGTGCTCTGCCTCGCCTGCGACCGCGACATCCACTCTGCCAATCCCCTCGCCAGCCGCCACGAGCGCGTCCCTGTCGCGCCCTTCTACGAGTCCGTACACTCCGTCAAGGCCTCCTCGCCGATCAACTTCCTCGACGACCACCGCTTCTTCTCCGACGCCGACGCTGATGTCAGCACCGAGGAGGCCGAGGCCGCGTCCTGGTTGTTACCTAATCCCAAAACAGATCTAAATTCCTCTCAGTACTTGTTCTCCGAATCCGAACCCGTTCCTTACATAGATCTGGACTATGCCGTCGCGGATCCGAAAGCGGATCCAAAAAACTCCGCTACCGCCGACGGCGTGGTTCCGGTGCAGAGCAACTACGAGCCGTTCGCCTACGGTTACAAATACAATTCCACCACTCTCTCGCAGTCACAGTCTCAGATGAGCCAAAGTGTATCGTCGTCGTCGATGGAGGTTGGAGTTGTGCCGGACGGAAACACGATGTCGGAGATATCGAACTGCAGCTACAGCAAGGTGGCCGCGATGACAGTGACGGCGCAGTTTTCAGCGGCGGATAGGGAGGCAAGAGTGTTAAGGTACCGGGAGAAAAGGAAGAACCGAAAGTTCGAGAAGACAATTCGTTACGCTTCGAGAAAAGCGTATGCAGAAACGAGACCAAGGATCAAAGGCAGGTTCGCAAAACGCTCTGACGCGGACCCTCTGGCCGGATACGGCGTCGTTCCGTCGTGCTGA 933 0.5938 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVALCEVCEQAPAHVTCKADAAVLCLACDRDIHSANPLASRHERVPVAPFYESVHSVKASSPINFLDDHRFFSDADADVSTEEAEAASWLLPNPKTDLNSSQYLFSESEPVPYIDLDYAVADPKADPKNSATADGVVPVQSNYEPFAYGYKYNSTTLSQSQSQMSQSVSSSSMEVGVVPDGNTMSEISNCSYSKVAAMTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDADPLAGYGVVPSC* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00243 310 CDD Bbox1_BBX-like 5 48 - -
Phac9g00243 310 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Phac9g00243 310 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Phac9g00243 310 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Phac9g00243 310 Pfam CCT motif 253 295 IPR010402 GO:0005515
Phac9g00243 310 CDD Bbox1_BBX-like 48 91 - -
Phac9g00243 310 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Phac9g00243 310 SMART bboxneu5 49 91 IPR000315 GO:0008270
Phac9g00243 310 SMART bboxneu5 1 48 IPR000315 GO:0008270
Phac9g00243 310 ProSiteProfiles CCT domain profile. 253 295 IPR010402 GO:0005515
Phac9g00243 310 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 298 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00243 Phac-Chr9 1605182 1607115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00243 1 309 C2C2-CO-like Transcription Factor Family AT5G24930 53.316 3.26e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phac9g00243 zf-B_box 3.7e-06 No_clan