Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00227 ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCAGTTCCTTCATTCAGAGGTTTGCAATCATTGGAGCCAATGTCTCCTGTTTCGTCCTCTGTGCAAGTGCCATCATCAACTGCTCCTTTTGCTGGTCTCGTCATATGCGTCACTGGTTTATCTAAAGAAGCTAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGTAAGTTTGAGCATGCACTGAAGCATGGAGCAAAAAATGGGCTTTTTATTGTCACACTGGGTTGGTTTGTGGATGGCGTCAGGAAAAATGTGAGGTTGAGCGAATCACATTATAGAGTGAAGAGTTACGGGGATAACAACATGCGCATGGAAGATTTTAGACTGCTTTCTGAGTATACAAATGCCGATAATCATTGTCTTCCAGCAAGAATCCAACAAGCCAAGAAAGCTAATAGTGTCGAGGAACTTCAAAGATTCTCTGTGAGAGAGTCTATCAGAATTTCGGACTCAACTTTGTCTGGCTGCTCCATCTATGTTGATCCAAGTATTTCATCCGAGTTGCGGAACAAGGTTACTGAGACTGCTTCAAGAGAAGGTGCTACTTTGGTGGAACAGTGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATACTCTAATAATCTCATTACACCTCTGTGGATAATCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTGCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATGCTTGAAGACGTTCATAATGGCATTTCAGGAAAGGAAGTAATAAAGCAAAGAGTCTCTAACTATCCTCTGGATAGTGAAAGTGAAGTTGGCTATGAAGAAAGACAACAAATTGTGAACTCCGCAAAAATTGGAGTCAGAAATCGCCGTGGTCGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTAGACTGTATCTGCTGGTCTATATCTGACTCAACCTCAACTGCTTCCATCTACACAGACTCTTTTAGTGTTGAAGATCCTAGTGAAAATCATGCTTCAATATTTTTTGATGCAAAAGGGGATGGCAAGGATTCAGAAGCTTCATTTTCAAACTCCACTCGTCCTCTGACAGAAAGGTTGTTATTAACTCCCTGTGAGTAG 1272 0.4269 MGGDGRVEVVSGKGCSRLFSSSVPSFRGLQSLEPMSPVSSSVQVPSSTAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQSFGGRKFEHALKHGAKNGLFIVTLGWFVDGVRKNVRLSESHYRVKSYGDNNMRMEDFRLLSEYTNADNHCLPARIQQAKKANSVEELQRFSVRESIRISDSTLSGCSIYVDPSISSELRNKVTETASREGATLVEQWFVGCNVSHVVTEGTSIQRYLGYSNNLITPLWIIKTAKEKYVRRLVHMSVDLAKQVGLMLEDVHNGISGKEVIKQRVSNYPLDSESEVGYEERQQIVNSAKIGVRNRRGRRMQTCQTPIRPITPNNLLDCICWSISDSTSTASIYTDSFSVEDPSENHASIFFDAKGDGKDSEASFSNSTRPLTERLLLTPCE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00227 423 ProSiteProfiles BRCT domain profile. 46 138 IPR001357 -
Phac9g00227 423 SUPERFAMILY BRCT domain 48 139 IPR036420 -
Phac9g00227 423 ProSiteProfiles BRCT domain profile. 192 270 IPR001357 -
Phac9g00227 423 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 416 - -
Phac9g00227 423 Pfam twin BRCT domain 54 120 IPR001357 -
Phac9g00227 423 CDD BRCT_TopBP1_rpt2_like 50 128 - -
Phac9g00227 423 Gene3D BRCT domain 49 140 IPR036420 -
Phac9g00227 423 SMART BRCT_7 194 270 IPR001357 -
Phac9g00227 423 SMART BRCT_7 48 128 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00227 Phac-Chr9 1428130 1434801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00227 43 138 Core DNA Replication Machinery Family AT1G77320 37.500 1.81e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00227 - - gmx:100815253 722.235