Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00223 ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCAGTTCCTTCATTCAGAGGTTTGCAATCATTGGAGCCAATGTCTCCTGTTTCGTCCTCTGTGCAAGTGCCATCATCAACTGCTCCTTTTGCTGGTCTCGTCATATGCGTCACTGGTTTATCTAAAGAAGCTAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGTAAGTTTGAGCATGCACTGAAGCATGGAGCAAAAAATGGGCTTTTTATTGTCACACTGGGTTGGTTTGTGGATGGCGTCAGGAAAAATGTGAGGTTGAGCGAATCACATTATAGAGTGAAGAGTTACGGGGATAACAACATGCGCATGGAAGATTTTAGACTGCTTTCTGAGTATACAAATGCCGATAATCATTGTCTTCCAGCAAGAATCCAACAAGCCAAGAAAGCTAATAGTGTCGAGGAACTTCAAAGATTCTCTGTGAGAGAGTCTATCAGAATTTCGGACTCAACTTTGTCTGGCTGCTCCATCTATGTTGATCCAAGTATTTCATCCGAGTTGCGGAACAAGGTTACTGAGACTGCTTCAAGAGAAGGTGCTACTTTGGTGGAACAGTGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATACTCTAATAATCTCATTACACCTCTGTGGATAATCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTGCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATGCTTGAAGACGTTCATAATGGCATTTCAGGAAAGGAAGTAATAAAGCAAAGAGTCTCTAACTATCCTCTGGATAGTGAAAGTGAAGTTGGCTATGAAGAAAGACAACAAATTGTGAACTCCGCAAAAATTGGAGTCAGAAATCGCCGTGGTCGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTAGACTGTATCTGCTGGTCTATATCTGACTCAACCTCAACTGCTTCCATCTACACAGACTCTTTTAGTGTTGAAGATCCTAGTGAAAATCATGCTTCAATATTTTTTGATGCAAAAGGGGATGGCAAGGATTCAGAAGCTTCATTTTCAAACTCCACTCGTCCTCTGACAGAAAGGTTGTTATTAACTCCCTTGAGAAATCTGAGTTGA 1281 0.4254 MGGDGRVEVVSGKGCSRLFSSSVPSFRGLQSLEPMSPVSSSVQVPSSTAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQSFGGRKFEHALKHGAKNGLFIVTLGWFVDGVRKNVRLSESHYRVKSYGDNNMRMEDFRLLSEYTNADNHCLPARIQQAKKANSVEELQRFSVRESIRISDSTLSGCSIYVDPSISSELRNKVTETASREGATLVEQWFVGCNVSHVVTEGTSIQRYLGYSNNLITPLWIIKTAKEKYVRRLVHMSVDLAKQVGLMLEDVHNGISGKEVIKQRVSNYPLDSESEVGYEERQQIVNSAKIGVRNRRGRRMQTCQTPIRPITPNNLLDCICWSISDSTSTASIYTDSFSVEDPSENHASIFFDAKGDGKDSEASFSNSTRPLTERLLLTPLRNLS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00223 426 ProSiteProfiles BRCT domain profile. 46 138 IPR001357 -
Phac9g00223 426 ProSiteProfiles BRCT domain profile. 192 270 IPR001357 -
Phac9g00223 426 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 416 - -
Phac9g00223 426 Pfam twin BRCT domain 54 120 IPR001357 -
Phac9g00223 426 SUPERFAMILY BRCT domain 48 139 IPR036420 -
Phac9g00223 426 CDD BRCT_TopBP1_rpt2_like 50 128 - -
Phac9g00223 426 Gene3D BRCT domain 49 140 IPR036420 -
Phac9g00223 426 SMART BRCT_7 194 270 IPR001357 -
Phac9g00223 426 SMART BRCT_7 48 128 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00223 Phac-Chr9 1428130 1434801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00223 43 138 Core DNA Replication Machinery Family AT1G77320 37.500 1.65e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00223 - - gmx:100815253 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac9g00223 9 1428130 1434801 Phac9g00223 9 1428130 1434801 ECH