Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00222 ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCAGTTCCTTCATTCAGAGGTTTGCAATCATTGGAGCCAATGTCTCCTGTTTCGTCCTCTGTGCAAGTGCCATCATCAACTGCTCCTTTTGCTGGTCTCGTCATATGCGTCACTGGTTTATCTAAAGAAGCTAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGTAAGTTTGAGCATGCACTGAAGCATGGAGCAAAAAATGGGCTTTTTATTGTCACACTGGGTTGGTTTGTGGATGGCGTCAGGAAAAATGTGAGGTTGAGCGAATCACATTATAGAGTGAAGAGTTACGGGGATAACAACATGCGCATGGAAGATTTTAGACTGCTTTCTGAGTATACAAATGCCGATAATCATTGTCTTCCAGCAAGAATCCAACAAGCCAAGAAAGCTAATAGTGTCGAGGAACTTCAAAGATTCTCTGTGAGAGAGTCTATCAGAATTTCGGACTCAACTTTGTCTGGCTGCTCCATCTATGTTGATCCAAGTATTTCATCCGAGTTGCGGAACAAGGTTACTGAGACTGCTTCAAGAGAAGGTGCTACTTTGGTGGAACAGTGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATACTCTAATAATCTCATTACACCTCTGTGGATAATCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTGCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATGCTTGAAGACGTTCATAATGGCATTTCAGGAAAGGAAGTAATAAAGCAAAGAGTCTCTAACTATCCTCTGGATAGTGAAAGTGAAGTTGGCTATGAAGAAAGACAACAAATTGTGAACTCCGCAAAAATTGGAGTCAGAAATCGCCGTGGTCGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTAGACTGTATCTGCTGGTCTATATCTGACTCAACCTCAACTGCTTCCATCTACACAGACTCTTTTAGTGTTGAAGATCCTAGTGAAAATCATGCTTCAATATTTTTTGATGCAAAAGGGGATGGCAAGGATTCAGAAGCTTCATTTTCAAACTCCACTCGTCCTCTGACAGAAAGTGAGAAATCTGAGTTGATATTCAAAAACCATTTCCTCACCATACTCTTCCCAATTGACCGATTTGCCGAGATGGGTCCTTCATCGAGAACGTTTTTCAGCCATAATGGTTTTACGTGCCTTCAGGTGTTGGATCATATACATGCATTTTATCAGGTACAAAGTTTATTCTTTTGGAATGCATGCATTATTATCAGCTCTCTCTAA 1452 0.4208 MGGDGRVEVVSGKGCSRLFSSSVPSFRGLQSLEPMSPVSSSVQVPSSTAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQSFGGRKFEHALKHGAKNGLFIVTLGWFVDGVRKNVRLSESHYRVKSYGDNNMRMEDFRLLSEYTNADNHCLPARIQQAKKANSVEELQRFSVRESIRISDSTLSGCSIYVDPSISSELRNKVTETASREGATLVEQWFVGCNVSHVVTEGTSIQRYLGYSNNLITPLWIIKTAKEKYVRRLVHMSVDLAKQVGLMLEDVHNGISGKEVIKQRVSNYPLDSESEVGYEERQQIVNSAKIGVRNRRGRRMQTCQTPIRPITPNNLLDCICWSISDSTSTASIYTDSFSVEDPSENHASIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFAEMGPSSRTFFSHNGFTCLQVLDHIHAFYQVQSLFFWNACIIISSL* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00222 483 Pfam twin BRCT domain 54 108 IPR001357 -
Phac9g00222 483 ProSiteProfiles BRCT domain profile. 46 138 IPR001357 -
Phac9g00222 483 ProSiteProfiles BRCT domain profile. 192 270 IPR001357 -
Phac9g00222 483 Gene3D BRCT domain 49 140 IPR036420 -
Phac9g00222 483 SUPERFAMILY BRCT domain 48 139 IPR036420 -
Phac9g00222 483 CDD BRCT_TopBP1_rpt2_like 50 128 - -
Phac9g00222 483 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 467 - -
Phac9g00222 483 SMART BRCT_7 194 270 IPR001357 -
Phac9g00222 483 SMART BRCT_7 48 128 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00222 Phac-Chr9 1428130 1434801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00222 43 138 Core DNA Replication Machinery Family AT1G77320 37.500 1.91e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00222 - - gmx:100815253 834.328