Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00171 ATGGAGGCAGCCGGAGGAGCTCCCTTGAACCCTTCCGTCCACGAAGTCTTCCTGGATTTCAAGGGCCGCAGAACAGCCATTGTTAAGGCCCTCACCACCGATTTTAAAGACTTCTTTCAGCAATGTGATCCAGAGAAGGAAGATCTTTGTCTTTATGGATTTCCTGATGAAGTCTGGCAAGTCGATCTGCCAGCTGAGGAGGTGCCTGCAGAAATTCCAGAGCCAGTATTAGGTATTAACTTTGCCAGAGACGGGATGGAAAAAAGGGACTGGCTATCCTTTGTTGCTGCCCACAGTGATTCATGGTTAATATCTGTGGCCATGTTTTTTGGTGCAAGATTTGGGTTTAATAAGGCTGATAGGAGTCATCTTTTTAATATGATAAATGATCTTCCAACAGTATTTGACGTTGTTGCTGGGAAGGTCAAGAAACAAGGAAAGAAAAAGTCATCAGCTTCTAATCATGACAACAACAAATCTAAATCAAACACCAAGAGAGGTTTTGAATCTCAAAGAAATTATTCAAAAGCAATGGAATTAAAGGACGAGGATGATTTGGAAGAGGAGGACGAAGAACATGGAGAGACACTTTGTGGAGCATGTGGAGAGAGCGATGCGGCTGATGTTAGTGTATTCTGGATTTGCTGTGACGTTTGTGAAAGGTGGTTTCATGGGAAATGTGTGAAGATTACCCGTGCTAAGGCTGAGTATATCAAGCATTACAAATGTCCATCTTGCAGCAACAAGAAGCTCGTCAATTGTAGCTTCTAG 771 0.4306 MEAAGGAPLNPSVHEVFLDFKGRRTAIVKALTTDFKDFFQQCDPEKEDLCLYGFPDEVWQVDLPAEEVPAEIPEPVLGINFARDGMEKRDWLSFVAAHSDSWLISVAMFFGARFGFNKADRSHLFNMINDLPTVFDVVAGKVKKQGKKKSSASNHDNNKSKSNTKRGFESQRNYSKAMELKDEDDLEEEDEEHGETLCGACGESDAADVSVFWICCDVCERWFHGKCVKITRAKAEYIKHYKCPSCSNKKLVNCSF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00171 256 FunFam PHD finger alfin-like protein 190 248 - -
Phac9g00171 256 MobiDBLite consensus disorder prediction 149 166 - -
Phac9g00171 256 SMART PHD_3 197 247 IPR001965 -
Phac9g00171 256 Pfam Alfin 13 139 IPR021998 GO:0006355|GO:0042393
Phac9g00171 256 SUPERFAMILY FYVE/PHD zinc finger 175 249 IPR011011 -
Phac9g00171 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 248 IPR013083 -
Phac9g00171 256 CDD PHD_AL_plant 197 249 IPR044104 -
Phac9g00171 256 MobiDBLite consensus disorder prediction 145 186 - -
Phac9g00171 256 Pfam PHD-finger 198 249 IPR019787 -
Phac9g00171 256 ProSitePatterns Zinc finger PHD-type signature. 198 246 IPR019786 -
Phac9g00171 256 PANTHER CPG BINDING PROTEIN 12 251 IPR045104 GO:0006355|GO:0042393
Phac9g00171 256 ProSiteProfiles Zinc finger PHD-type profile. 195 249 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00171 Phac-Chr9 1152247 1154912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00171 5 250 Alfin-like Transcription Factor Family AT3G42790 65.060 5.95e-104 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phac9g00171 Alfin 3.2e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00171 K26274 - mnt:21387296 352.829