Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00170 ATGGACGCAGCCGGAGGAGCTCCCTACAATCCCCGTTCCGTCAACGAGGTCTTCCGAGATTTCAAGGGCCGCAGAGCCGCCATTGTTAAGGCCCTCACCACCGATGTTGAATTGTTCTATCAGCAGTGTGATCCAGATAAGGAAAATCTTTGTCTTTATGGATTTCCTAACGAGCACTGGGAAGTCAATCTACCTGCTGAGGAGGTTCCTCCAGAGCTTCCAGAACCAGCATTAGGTATTAACTTTGCCAGAGACGGGATGGAAGAAAAGGACTGGCTATCCTTGGTTGCTGTGCACAGTGATTCATGGTTAATTTCTGTGGCCATGTATTTTGGTGCAAGATTTGGATTTGATAGGGCAGATAGGAAGAGTCTTTTCAGTATGATAAATGATCTTCCAACAATATTTGAGGTTGTTTCAGGGAAGTCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAGTCATGACAATAACAAATCTAAACCAAACTCCAAGAGAGGTTCTGAATCACAAGAAAAGTATTCAAAATCAATGGAATCAAAGGATGAGGGTGCTTTGGAAAAGTACGATGAAGAGCATGGAGAGACACTCTGTGGGGCTTGTGGAGAGAACTATGCTATTGATGCTGATGAGTTCTGGATTTGCTGTGACATTTGTGAGAGGTGGTTTCATGGAAAATGTGTGAGGATTACCCCTGCGAAAGCTGAGGGTATCAAGCATTACAAATGTCCATCTTGCAGCAACAAGAAAGCTCGTCAATAG 765 0.4392 MDAAGGAPYNPRSVNEVFRDFKGRRAAIVKALTTDVELFYQQCDPDKENLCLYGFPNEHWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDSWLISVAMYFGARFGFDRADRKSLFSMINDLPTIFEVVSGKSKKQGKEKSSVSSHDNNKSKPNSKRGSESQEKYSKSMESKDEGALEKYDEEHGETLCGACGENYAIDADEFWICCDICERWFHGKCVRITPAKAEGIKHYKCPSCSNKKARQ* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00170 254 CDD PHD_AL_plant 198 250 IPR044104 -
Phac9g00170 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 249 IPR013083 -
Phac9g00170 254 MobiDBLite consensus disorder prediction 146 187 - -
Phac9g00170 254 SMART PHD_3 198 248 IPR001965 -
Phac9g00170 254 Pfam PHD-finger 199 250 IPR019787 -
Phac9g00170 254 ProSiteProfiles Zinc finger PHD-type profile. 196 250 IPR019787 -
Phac9g00170 254 Pfam Alfin 14 140 IPR021998 GO:0006355|GO:0042393
Phac9g00170 254 PANTHER CPG BINDING PROTEIN 10 254 IPR045104 GO:0006355|GO:0042393
Phac9g00170 254 FunFam PHD finger alfin-like protein 191 249 - -
Phac9g00170 254 SUPERFAMILY FYVE/PHD zinc finger 191 251 IPR011011 -
Phac9g00170 254 ProSitePatterns Zinc finger PHD-type signature. 199 247 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00170 Phac-Chr9 1145295 1148634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00170 4 253 Alfin-like Transcription Factor Family AT3G42790 69.323 3.79e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phac9g00170 Alfin 2.8e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00170 K26274 - vvi:100247536 423.705