LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac9g00130	ATGAAGGGAGGTATAGTGAAAGAAGAAGAAACAACCGCATTTGCAGCTGCAGCTGCTGCTGCTGCTTCTTCTTCATCTTCATCCTCAACTTCCAACCTCTCCCCGCAACCTAGGGAAGGGTTGCACGACGTGGGCCCTCCTCCGTTTCTCACCAAAACCTTTGACGTGGTGGAAGACCCTTCCACCAACGACATCGTTTCGTGGAGCAGGGCGCGCAACAGTTTCGTCGTTTGGGACTCTCACAAGTTCTCCACCACCATCTTGCCTCGTTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGACAGCTCAACACCTATGGTTTTAGAAAAGTTGATCCTGACAAATGGGAATTTGCGAACGAAGGGTTTCTGGCGGGACAGAGGCACTTGTTGAAGACGATCAAGAGAAGAAGGCACGTGGCGCAGACACAGTCGCACGAGGGAGGAAGTGGAGCTTGTGTTGAATTGGGGGAGTTTGGATTGGAAGGCGAGATTGAGAGATTGATGAGAGACAGGGCGGTTTTGATGGCTGAAATTGTGAGGTTGAGGCAGCAACAGCACAATTCAAGGGAGCAATTGTTGTCCATTGAGACCAGATTGCAAGTCAGCGAGAAGAAACATCAGCAGATGATCACTTTTCTTGCTAAGGCACTCAACAATCAGACTTTTATTCAGCAGTTCCTTCACAGGAACGCTCAGAAGATAGAGTTGCAAGGTGCTAGAAGAAAGAGGAGACTAACTGCTTCCCCAAGTGTGGAGAATTTGCAGCAAGATCCTGTGATTGATGTGGCATTGCCAGTTGAAGAGGAATCGACTACTATTGAGTCTCTTCTCTCAGCTGCTTGTGACGATGATCCATTAGAATCAAGCACTGAATTCGAAGACCCGATGTTAAGTTCAGTTCCTAATACTGGTGGTGGGAGTAATTTGGGGGTGGTAAGTGATGCAATCTGGGAGGACTTACTGAACCAAGACTTGGTTGCTGGGGACCCAGAGGAGGAAGTTGTCATTGGTGATTTTTCACAAGTTGATGTTCCTGTGGAGGATTTGGTTGCTGATCCTGATGAATGGAGTGAGGATTTGCAGAATCTTGTGGATCATCTGGGTCATCTTGCGTCCACACCCTAG	1131	0.4828	MKGGIVKEEETTAFAAAAAAAASSSSSSSTSNLSPQPREGLHDVGPPPFLTKTFDVVEDPSTNDIVSWSRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRHVAQTQSHEGGSGACVELGEFGLEGEIERLMRDRAVLMAEIVRLRQQQHNSREQLLSIETRLQVSEKKHQQMITFLAKALNNQTFIQQFLHRNAQKIELQGARRKRRLTASPSVENLQQDPVIDVALPVEEESTTIESLLSAACDDDPLESSTEFEDPMLSSVPNTGGGSNLGVVSDAIWEDLLNQDLVAGDPEEEVVIGDFSQVDVPVEDLVADPDEWSEDLQNLVDHLGHLASTP*	377

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac9g00130	376	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	35	257	IPR027725	-
	Phac9g00130	376	SMART	hsfneu3	45	138	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac9g00130	376	Gene3D	-	42	139	IPR036388	-
	Phac9g00130	376	MobiDBLite	consensus disorder prediction	21	37	-	-
	Phac9g00130	376	FunFam	Heat shock transcription factor 1	42	139	-	-
	Phac9g00130	376	Coils	Coil	166	186	-	-
	Phac9g00130	376	SUPERFAMILY	"Winged helix" DNA-binding domain	45	138	IPR036390	-
	Phac9g00130	376	Pfam	HSF-type DNA-binding	49	138	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac9g00130	376	PRINTS	Heat shock factor (HSF) domain signature	49	72	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac9g00130	376	PRINTS	Heat shock factor (HSF) domain signature	87	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac9g00130	376	PRINTS	Heat shock factor (HSF) domain signature	100	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac9g00130	376	ProSitePatterns	HSF-type DNA-binding domain signature.	88	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Phac9g00130	376	MobiDBLite	consensus disorder prediction	21	45	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac9g00130	Phac-Chr9	973430	975818	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac9g00130	35	376	HSF	AT2G26150	51.156	6.92e-119	346

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Phac9g00130		HSF_DNA-bind	1.9e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac9g00130	K09419		-	gmx:100794605	571.237