Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00090 ATGATACCAAACGTTCAAATACACCTCTGGGACTCCGCCGCCGCAGACAGAGGACCACTCTCCCCGTTCTCTCCCAATGCGCCCGACACCGCCTCCTTCTCCACCGATCATTTCCGGATGTTCCAGTTCAAGGTACTCACCTGTCCACGTCCCAGGTCCCACGACTGGACCCAGTGTCCCTACGCCCACCCCGCCGAGAAGGCTCGCCGCCGGGACCCCCGCAAGTTCCTCTACTCCGCCACGGCCTGCCCTGATTACCGGAAGGGGAACTGCAAGAGGGGTGACACGTGTCAGTTTGCGCATGGCGTCTTCGAGTGCTGGCTCCACCCTTCTCGCTACAGAACCCACCTCTGCAAAGACGGGACTAATTGCCGCCGCAGAGTTTGCTTCTTCGCTCACACCAACGACCAGCTCCGCCTCGTACCCGAATCGTCCTCTCTTTCATCTCCCACTTCCGTTATGAACTCTTCCTTCTTCGATTCTCCGCCCTCTTCTCCTTACGTATACAACATGCAGGAGATAGTTAGCTCAATGCGGAATGTTCAACTGGACGATGGGCTTTTTTCGGGTTTGACCCGGTGCGTGTTCGGGTCGCCACGTTGCGGTATTTTAAGTGGCAATGCGTGTGAGGAAGAAGAGGCTGCTATGGAGAGAGTGGAATCTGGGAGAGATATTAGGGCGAGAATCTACGCTAAGCTTAGCAGGGATAATTCCATTGGAGGTTCTGCTCCTCACATTGGATTTGGTGGCCTTTGA 756 0.5582 MIPNVQIHLWDSAAADRGPLSPFSPNAPDTASFSTDHFRMFQFKVLTCPRPRSHDWTQCPYAHPAEKARRRDPRKFLYSATACPDYRKGNCKRGDTCQFAHGVFECWLHPSRYRTHLCKDGTNCRRRVCFFAHTNDQLRLVPESSSLSSPTSVMNSSFFDSPPSSPYVYNMQEIVSSMRNVQLDDGLFSGLTRCVFGSPRCGILSGNACEEEEAAMERVESGRDIRARIYAKLSRDNSIGGSAPHIGFGGL* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00090 251 PANTHER UNKEMPT FAMILY MEMBER 24 241 IPR045234 -
Phac9g00090 251 SMART c3hfinal6 77 103 IPR000571 GO:0046872
Phac9g00090 251 SMART c3hfinal6 112 135 IPR000571 GO:0046872
Phac9g00090 251 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 102 IPR000571 GO:0046872
Phac9g00090 251 SUPERFAMILY CCCH zinc finger 76 106 IPR036855 GO:0046872
Phac9g00090 251 Gene3D - 77 140 - -
Phac9g00090 251 ProSiteProfiles Zinc finger C3H1-type profile. 77 104 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00090 Phac-Chr9 716919 718012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00090 22 166 C2H2 Transcription Factor Family AT5G12850 54.777 4.40e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac9g00090 zf-CCCH 8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00090 - K23048 gmx:100786368 348.591