Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00088 ATGCTCTTTGATATCTCTAACCCAGGCCTTCGACTTGGTCTTGGTCTCGGTCTTGGCCTCCAAGATCAGTCACAAGAAACTTGCATGAAGAGCCATGAACAAAGGCAAAGACAAAGACAAGGAAAAAACCAGAAAAAAAAGGAAGCCGATCCACGTAACAGGGCTCATGATGACGCAAATAATAACCACCAAGTTACAAAGACTGATTCCGATGAATATTTTAATTTTCACCCTCATGCTTCTCCTGCCAGTGCAGTGTCTTCGTTTTTTAACTCATCAAGCTTCATCAAGAGAGAGAGAGATCAGTTTGCGGGTGAAGAACTCGAGTTAGAGGTAGAGAAGTTTCCCTCAAACTTAAGGGTTGTGGATCTTGATGAATATGGTTTCTCCAAGAAGAAGCTTAGGCTCACCAAAGAACAATCTGCAGTATTGGAAGATAGCTTCAAAGAGCATTCTACTCTCACTCTGACACAGAAACAAGAATTGGCAAAGAAACTGAATCTGCGGGCAAGACAAGTGGAGGTATGGTTTCAGAACAGAAGAGCCAGGAATAAACTGAAACAAACGGAAGTGAACTGTGAGTTACTGAAAAAGTGCTGCAAAAGTCTAACAGAGGAGAACAAGATGCTGCAAAAAGAGTTGGAAGAGCTTAAATCGATGACAACAGCATTGCAGGGACCCATTTTTATGAAGCTTCCAGTGGCAACCCTTAGAATATGCCCTTCCTGTGAGAGAATTTGCGGTGGCAGCGGCGCCACCACCAACAATGGCTCCTCTCCCACCACCATCACCACCACCTCCACCTTGCTTGTGGGCCCAAAGCCCCCTCATGATCACCACTTCTATAAAAATAAAAATAACTATACATTCACACAATCATCTGCAGCTTGCTAG 894 0.4385 MLFDISNPGLRLGLGLGLGLQDQSQETCMKSHEQRQRQRQGKNQKKKEADPRNRAHDDANNNHQVTKTDSDEYFNFHPHASPASAVSSFFNSSSFIKRERDQFAGEELELEVEKFPSNLRVVDLDEYGFSKKKLRLTKEQSAVLEDSFKEHSTLTLTQKQELAKKLNLRARQVEVWFQNRRARNKLKQTEVNCELLKKCCKSLTEENKMLQKELEELKSMTTALQGPIFMKLPVATLRICPSCERICGGSGATTNNGSSPTTITTTSTLLVGPKPPHDHHFYKNKNNYTFTQSSAAC* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00088 297 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981|GO:0006355
Phac9g00088 297 Gene3D - 127 192 - -
Phac9g00088 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 265 - -
Phac9g00088 297 MobiDBLite consensus disorder prediction 28 66 - -
Phac9g00088 297 SMART halz 187 230 IPR003106 GO:0006355|GO:0043565
Phac9g00088 297 MobiDBLite consensus disorder prediction 25 66 - -
Phac9g00088 297 SUPERFAMILY Homeodomain-like 125 188 IPR009057 -
Phac9g00088 297 SMART HOX_1 129 191 IPR001356 GO:0003677
Phac9g00088 297 Pfam Homeobox associated leucine zipper 187 220 IPR003106 GO:0006355|GO:0043565
Phac9g00088 297 Pfam Homeodomain 131 185 IPR001356 GO:0003677
Phac9g00088 297 Coils Coil 186 220 - -
Phac9g00088 297 CDD homeodomain 131 188 IPR001356 GO:0003677
Phac9g00088 297 ProSiteProfiles 'Homeobox' domain profile. 127 187 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00088 Phac-Chr9 700751 704114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00088 125 297 Homeobox Transcription Factor Family AT4G37790 54.598 6.09e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac9g00088 Homeodomain 8.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00088 K09338 - gmx:100790927 297.36