Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00071 ATGCGAACTGAAGAAGTGGGAGTGAAGATCAAACTCAGAGACATATTGAGAATTGATGTGACTATCATTGTTCGATATTATAATCATCATTTACGTGTTATTGAAACATCAACCTTATTAAAAAGTTCAACTCCCATTAGATGTCAGAATTTCTTTGAAAATAATACAGATTTCTTAAGGAGTGTGTTGTTCGACCCACGCTGTTCTTACTGTTTCATTCCAGAAATGATTGATCCAATATCAGAAAAAATTGTTAATATGATTAAAGTAGTCTTGGAATTTGGTGGTGGTCCTAAGTCTGTAGATTCAGAATGCAAAGAATTGCCTTTAAATATAGACATCATCGTGGATGTAGTTCCAGATGTAGAAAATGAAGAGGAAGAGGAATTGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGGGGAAGAGATGGAACATTATGCAGCAACGATTCCAGCATCTGCAAAAGCTATTGATTCCCTTAAAACATTCTCAATTTCACCTTTTTTGAAAAACAAAATTGAGAAGTGTAATATTTGCTTGGAAGATGTTCATTTTAAAGAGAATGAAGAGAATGTGAAGTTATCGTCATTGCCATGTGAACATGTTTTTCATCATCTCTGTATTGTAAAGTGGCTGCAGACAAGTCACACTTGTCCATTATGTCGTTACCCTATGCCCGTTGATAATAACTGA 705 0.3546 MRTEEVGVKIKLRDILRIDVTIIVRYYNHHLRVIETSTLLKSSTPIRCQNFFENNTDFLRSVLFDPRCSYCFIPEMIDPISEKIVNMIKVVLEFGGGPKSVDSECKELPLNIDIIVDVVPDVENEEEEELEEEEEEEEEEEEEGEEMEHYAATIPASAKAIDSLKTFSISPFLKNKIEKCNICLEDVHFKENEENVKLSSLPCEHVFHHLCIVKWLQTSHTCPLCRYPMPVDNN* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00071 234 SMART ring_2 180 225 IPR001841 -
Phac9g00071 234 SUPERFAMILY RING/U-box 160 231 - -
Phac9g00071 234 Pfam Ring finger domain 179 226 IPR001841 -
Phac9g00071 234 Coils Coil 119 150 - -
Phac9g00071 234 ProSiteProfiles Zinc finger RING-type profile. 180 226 IPR001841 -
Phac9g00071 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 232 IPR013083 -
Phac9g00071 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 123 230 - -
Phac9g00071 234 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00071 Phac-Chr9 568815 569544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00071 155 234 C3H Transcription Factor Family AT1G26800 42.500 1.74e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00071 - - pvu:PHAVU_009G017600g 360.918