Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00022 ATGCAGAAGGAAGAGAGTGTGTTTGATGTTAGAGGGCATAGAAGAGCAGAAGAGTCAGAAGCAGAGGTGCATGTCAACGCTCCTAAGCTCCTCACACAGACAACTCTGCAACAGTGCTCTCTGTCTGTCACTCTGCCAATAAAGGAACACACCCAACCTAAAAAAAGCCAACTCTGCTCAGTAACCGTTCCCCCACGCGGCAACCCTGCTTCTTTAATTCTCATTTTCTCTCACCCTTTCTCTCTGCCTATTTACTCCTTCATTCATTCATATTCATGTGCTTTTTCTTTTCCAACACTTTTAACACACCCAACACCACTCTTCACTTCTTCCTTTTCCGGTGCCGTCCGAATGTCATCGGGGACGCCAACCCACGCCCCAGAGGACGGAAAACACTACCCCGCTCCACTCGCTCCTCACGACGACGTCGTCCGAGACTCCTCTCTCTTCTGGGACACTCTCAAACGTTTTCACTTCCTTATGGCTACCAAATTCATGATTCCTGTGATTGGAGGGAAGGAGCTGGATTTGCACGTTCTTTACGTGGAAGTTACCAGAAGAAGTGGCTACGAGAAGGTAGTTGCAGAGAAGAAGTGGAGGGAAGTTGGTAGTGTTTTCAAGTTTTCATCAACTACCACAAGTGCTTCTTTTGTATTGAAGAAACATTACTTCAGTCTTCTCTATCATTATGAACAAGTTCATTTTTTCAAAGCTCGGGGTTGTGTCTATACTCCTTCAACAGATGCATCTTCCGGAAACAGCCCTTCGTGGAGACCTGAATTAGCTATCGTGGAATATTCTCCTAAGCCCTTAAATAGTAGTCCTGAATCTCGTGCTGAAGAAACTTCATGTCTTTCGGGGAATGGAACGATAGAGGGGAAATTTGAGTGTGGTTATTTAGTGTCTGTGAAACTGGGTTCAGAGGTTCTTAGAGGGGTGCTTTACCATCCAGAAAAAATGGTTGCTCTTCCTACGATCCCTCCTCAACATGAGAATGCCATTGTGCCATTCAAAAGTAAAGCTCATCGTTCTGGTCGTAGGAGGAGAAACAAGAGAAGGTGGGACCCCAACTATCCAAAACCAAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACTCTCTCAAAGCTCTCTACCCAAACAGAGAAAGGGAGTTTACAAAGATGATTGGCCAGTCATGGAACAGTCTTAACCCCGAAGAAAGAATGGTTTATCAGAACATCGGGTTAAGAGACAAAGAAAGGTACAAGAGAGAATTGACTGAGTATAAAGAGAAGATGAAGCTTAGGCAGACTCCAGAAGTTGGACTTCCATAG 1323 0.4475 MQKEESVFDVRGHRRAEESEAEVHVNAPKLLTQTTLQQCSLSVTLPIKEHTQPKKSQLCSVTVPPRGNPASLILIFSHPFSLPIYSFIHSYSCAFSFPTLLTHPTPLFTSSFSGAVRMSSGTPTHAPEDGKHYPAPLAPHDDVVRDSSLFWDTLKRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFKFSSTTTSASFVLKKHYFSLLYHYEQVHFFKARGCVYTPSTDASSGNSPSWRPELAIVEYSPKPLNSSPESRAEETSCLSGNGTIEGKFECGYLVSVKLGSEVLRGVLYHPEKMVALPTIPPQHENAIVPFKSKAHRSGRRRRNKRRWDPNYPKPNRSGYNFFFAEKHYSLKALYPNREREFTKMIGQSWNSLNPEERMVYQNIGLRDKERYKRELTEYKEKMKLRQTPEVGLP* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00022 440 MobiDBLite consensus disorder prediction 339 358 - -
Phac9g00022 440 SMART hmgende2 358 427 IPR009071 -
Phac9g00022 440 Gene3D - 139 240 IPR036431 GO:0003677
Phac9g00022 440 Gene3D High mobility group box domain 343 437 IPR036910 -
Phac9g00022 440 MobiDBLite consensus disorder prediction 340 354 - -
Phac9g00022 440 Pfam ARID/BRIGHT DNA binding domain 148 231 IPR001606 GO:0003677
Phac9g00022 440 CDD HMG-box_AtHMGB9-like 359 425 - -
Phac9g00022 440 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 359 426 IPR009071 -
Phac9g00022 440 SUPERFAMILY HMG-box 356 429 IPR036910 -
Phac9g00022 440 CDD ARID_HMGB9-like 146 231 IPR045303 GO:0003677
Phac9g00022 440 SMART ARID_2 141 231 - -
Phac9g00022 440 Pfam HMG (high mobility group) box 359 426 IPR009071 -
Phac9g00022 440 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 121 432 - -
Phac9g00022 440 SUPERFAMILY ARID-like 142 245 IPR036431 GO:0003677
Phac9g00022 440 SMART bright_3 145 236 IPR001606 GO:0003677
Phac9g00022 440 ProSiteProfiles ARID domain profile. 144 235 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00022 Phac-Chr9 203742 206345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00022 126 433 ARID Transcription Factor Family AT1G76110 61.783 7.05e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phac9g00022 ARID 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00022 - - gmx:100784746 565.074