Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac9g00021 ATGTCATCGGGGACGCCAACCCACGCCCCAGAGGACGGAAAACACTACCCCGCTCCACTCGCTCCTCACGACGACGTCGTCCGAGACTCCTCTCTCTTCTGGGACACTCTCAAACGTTTTCACTTCCTTATGGCTACCAAATTCATGATTCCTGTGATTGGAGGGAAGGAGCTGGATTTGCACGTTCTTTACGTGGAAGTTACCAGAAGAAGTGGCTACGAGAAGGTAGTTGCAGAGAAGAAGTGGAGGGAAGTTGGTAGTGTTTTCAAGTTTTCATCAACTACCACAAGTGCTTCTTTTGTATTGAAGAAACATTACTTCAGTCTTCTCTATCATTATGAACAAGTTCATTTTTTCAAAGCTCGGGGTTGTGTCTATACTCCTTCAACAGATGCATCTTCCGGAAACAGCCCTTCGTGGAGACCTGAATTAGCTATCGTGGAATATTCTCCTAAGCCCTTAAATAGTAGTCCTGAATCTCGTGCTGAAGAAACTTCATGTCTTTCGGGGAATGGAACGATAGAGGGGAAATTTGAGTGTGGTTATTTAGTGTCTGTGAAACTGGGTTCAGAGGTTCTTAGAGGGGTGCTTTACCATCCAGAAAAAATGGTTGCTCTTCCTACGATCCCTCCTCAACATGAGAATGCCATTGTGCCATTCAAAAGTAAAGCTCATCGTTCTGGTCGTAGGAGGAGAAACAAGAGAAGGTGGGACCCCAACTATCCAAAACCAAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACTCTCTCAAAGCTCTCTACCCAAACAGAGAAAGGGAGTTTACAAAGATGATTGGCCAGTCATGGAACAGTCTTAACCCCGAAGAAAGAATGGTTTATCAGAACATCGGGTTAAGAGACAAAGAAAGGTACAAGAGAGAATTGACTGAGTATAAAGAGAAGATGAAGCTTAGGCAGACTCCAGAAGTTGGACTTCCATAG 972 0.4434 MSSGTPTHAPEDGKHYPAPLAPHDDVVRDSSLFWDTLKRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFKFSSTTTSASFVLKKHYFSLLYHYEQVHFFKARGCVYTPSTDASSGNSPSWRPELAIVEYSPKPLNSSPESRAEETSCLSGNGTIEGKFECGYLVSVKLGSEVLRGVLYHPEKMVALPTIPPQHENAIVPFKSKAHRSGRRRRNKRRWDPNYPKPNRSGYNFFFAEKHYSLKALYPNREREFTKMIGQSWNSLNPEERMVYQNIGLRDKERYKRELTEYKEKMKLRQTPEVGLP* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac9g00021 323 SUPERFAMILY HMG-box 239 312 IPR036910 -
Phac9g00021 323 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 315 - -
Phac9g00021 323 SUPERFAMILY ARID-like 25 128 IPR036431 GO:0003677
Phac9g00021 323 SMART ARID_2 24 114 - -
Phac9g00021 323 ProSiteProfiles ARID domain profile. 27 118 IPR001606 GO:0003677
Phac9g00021 323 MobiDBLite consensus disorder prediction 221 242 - -
Phac9g00021 323 Gene3D - 22 123 IPR036431 GO:0003677
Phac9g00021 323 Pfam ARID/BRIGHT DNA binding domain 31 114 IPR001606 GO:0003677
Phac9g00021 323 MobiDBLite consensus disorder prediction 1 21 - -
Phac9g00021 323 Gene3D High mobility group box domain 226 320 IPR036910 -
Phac9g00021 323 Pfam HMG (high mobility group) box 242 309 IPR009071 -
Phac9g00021 323 CDD ARID_HMGB9-like 29 114 IPR045303 GO:0003677
Phac9g00021 323 SMART hmgende2 241 310 IPR009071 -
Phac9g00021 323 CDD HMG-box_AtHMGB9-like 242 308 - -
Phac9g00021 323 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 242 309 IPR009071 -
Phac9g00021 323 SMART bright_3 28 119 IPR001606 GO:0003677
Phac9g00021 323 MobiDBLite consensus disorder prediction 223 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac9g00021 Phac-Chr9 203742 206345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac9g00021 9 316 ARID Transcription Factor Family AT1G76110 61.783 2.19e-132 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phac9g00021 ARID 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac9g00021 - - gmx:100784746 565.074