Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03908 ATGGCAGAGCTTCCATGTGACTCCGATGGCCTCTGCATGCGCTGCAAGGAGAAACCCCCTTCTTCCCAAACCCTCTCTTGCCGCACATGCGCCACTCCATGGCACATTTCTTGCCTCTCTGCTCCGCCGGTCTCCGTTTCCGACCTCCACTGGGACTGCCCCGACTGCTCCGACCTCTGCAGCCACCACCCGGTTGCTCCCTCCGACGACATTGTCTCCACCATCCGCGCTATTCAGGCGGATGAATCTCTCTCTGACCAGCAGAAAGCCAAACGATGCCAAGAGCTACTCGCTGGTTCCTCTGGTTCCTCATCGGATCCGTCGAAGGACAAAACTAATGTTGCTGATATCTTCGATGACAGCTTCAGCTGTTCCATTTGCATGCAACTACCTGATAGGCCTGTCACGACGCCTTGTGGACATAATTTCTGCTTGAGATGCTTTGAGAAATGGATCGGTCAGGGAAAACGCACTTGTGCGAATTGTCGAGCTCAGATACCTGCGAAGATGTCAAGTCAACCGAGGATTAACTCGCAGTTGGCTATGGCGATTCGAATGGCGAAGTTAGCGAGGTCTGGGAGGGCTTCTGGGCCACCGAAAGTGTGTCACTTTATGCGGAATCAGGATCGCCCAGATACTGCTTTCACCACCGAGAGAGCGAAGAAAACTGGGAAAGCCAATGCTTGTTCTGGGAAAATCTTTGTTACTGTGCCACCTGACCATTTTGGTCCGATTCCGGCTGAGAATGATCCCAAGAGGAATCGTGGTGTTTTGGTTGGTGATACGTGGGAGGATCGGATGGAGTGCCGTCAATGGGGCGCTCATCTGCCTCATGTTGCGGGTATTGCTGGACAGAGTAGTTATGGTTCCCAATCTGTTGCCCTTTCTGGTGGCTACGTGGACGATGAGGATCATGGGGAATGGTTCCTTTACACTGGAAGTGGTGGAAGAGATTTGAGTGGTAACAAGCGCACCAACAAACTTCAATCCTTTGACCAGAAGTTTGAAAACATGAATGAGGCCTTGCGACTCAGCTGCCGAATGGGTTACCCTGTTCGGGTTGTAAGGTCGCATAAGGAAAAACGTTCTTCTTATGCACCCGAATCTGGGGTGCGTTATGATGGGGTCTATAGAATAGAGAAATGCTGGCGCAAAAATGGAATACAAGGCTGCAAGGTTTGTAGGTATTTGTTCGTGAGATGTGACAATGAGCCAGCACCGTGGACAAGTGATGAATCTGGAGACCGTCCACGCCCACTGCCTAAGATTGAGGAGCTAAAAGGTGCAATTGATATCACTGAAAGGAAGGGCGATCCATCGTGGGATTATGATGAAGAGAAGGGGTGCTGGTTGTGGAAGAAGCCTCCCCCAGAAAGCAGGAAAGCAGTGGACGTCAATGAAGATGGGACAACAGTCAGAGTAAAACGGAAAGCGGAAAACCTGACTGAGGAACAAAAGCAAAAAAAGCTATTGAAAGACTTTGGTTGCTTAATATGCCACAAGGTGTTGGATTTCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGTCTTTTCTGGACAAAGCCTCATCAGGGAAAGGTCGAGAGGTGGACGCACTTTAAGAGCACAAAAGACTATTATGAAATGCCCAGCATGTAGTAATGACATTGCTGATTTTCTTCAGAATCCACAGGTTAATAGAGAAATGCTGAATTTCATAACAAAATTTGGAAAGAAGCCTGAAGAAGAAAAATGTGAAGAGTCAAATGAGGATAATGATGAAAGTCTGCATAATGCAACTGAGCTTTCAAAACCTTCTGATTCTGGTGTTGTCCTAGAGGAAATTAAGGACAGTGATCTGAATCAGCAACATAAGCGAAGGAAATAG 1887 0.4838 MAELPCDSDGLCMRCKEKPPSSQTLSCRTCATPWHISCLSAPPVSVSDLHWDCPDCSDLCSHHPVAPSDDIVSTIRAIQADESLSDQQKAKRCQELLAGSSGSSSDPSKDKTNVADIFDDSFSCSICMQLPDRPVTTPCGHNFCLRCFEKWIGQGKRTCANCRAQIPAKMSSQPRINSQLAMAIRMAKLARSGRASGPPKVCHFMRNQDRPDTAFTTERAKKTGKANACSGKIFVTVPPDHFGPIPAENDPKRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSSYGSQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRLSCRMGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKNGIQGCKVCRYLFVRCDNEPAPWTSDESGDRPRPLPKIEELKGAIDITERKGDPSWDYDEEKGCWLWKKPPPESRKAVDVNEDGTTVRVKRKAENLTEEQKQKKLLKDFGCLICHKVLDFPLTTPCAHNFCKACLEGVFSGQSLIRERSRGGRTLRAQKTIMKCPACSNDIADFLQNPQVNREMLNFITKFGKKPEEEKCEESNEDNDESLHNATELSKPSDSGVVLEEIKDSDLNQQHKRRK* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03908 628 ProSiteProfiles YDG domain profile. 252 400 IPR003105 -
Phac8g03908 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 190 IPR013083 -
Phac8g03908 628 ProSiteProfiles Zinc finger RING-type profile. 124 163 IPR001841 -
Phac8g03908 628 Pfam SAD/SRA domain 255 403 IPR003105 -
Phac8g03908 628 SUPERFAMILY RING/U-box 116 170 - -
Phac8g03908 628 SMART ring_2 124 162 IPR001841 -
Phac8g03908 628 SMART ring_2 12 56 IPR001841 -
Phac8g03908 628 SMART ring_2 496 552 IPR001841 -
Phac8g03908 628 Pfam Zinc finger, C3HC4 type (RING finger) 122 167 - -
Phac8g03908 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 605 IPR013083 -
Phac8g03908 628 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 223 418 - -
Phac8g03908 628 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 590 IPR045134 -
Phac8g03908 628 Gene3D - 223 419 IPR036987 -
Phac8g03908 628 SUPERFAMILY FYVE/PHD zinc finger 5 58 IPR011011 -
Phac8g03908 628 ProSitePatterns Zinc finger RING-type signature. 511 520 IPR017907 -
Phac8g03908 628 SUPERFAMILY RING/U-box 490 576 - -
Phac8g03908 628 CDD RING-HC_ORTHRUS_rpt1 120 167 IPR047498 -
Phac8g03908 628 SUPERFAMILY PUA domain-like 226 420 IPR015947 -
Phac8g03908 628 ProSiteProfiles Zinc finger RING-type profile. 496 553 IPR001841 -
Phac8g03908 628 ProSiteProfiles Zinc finger PHD-type profile. 9 59 IPR019787 -
Phac8g03908 628 MobiDBLite consensus disorder prediction 580 628 - -
Phac8g03908 628 SMART G9a_1 247 404 IPR003105 -
Phac8g03908 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 59 IPR013083 -
Phac8g03908 628 MobiDBLite consensus disorder prediction 580 600 - -
Phac8g03908 628 Pfam RING-type zinc-finger 496 550 IPR027370 -
Phac8g03908 628 SMART PHD_3 11 57 IPR001965 -
Phac8g03908 628 ProSitePatterns Zinc finger PHD-type signature. 12 56 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03908 Phac-Chr8 44890300 44894121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03908 3 582 C2H2 Transcription Factor Family AT5G39550 61.083 0.0 748