Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03894 ATGGAGAATCGTGGGAGAAGTGGAAGGATCATAAAGTTGGCATGTCACGAGTTGCAGTTGGCGGGTAATAATCGTGAGTTAACAACTCCAAAAAATTTTGCCAAAGCATTTCTTTGGATGGAAAATAGAGGTGACGGTGCTGATGCTGATCTTCAATTTCACGCTGATTTTGTGCCGGATCCTTCCCAGAGATGTACTGGAAATGAAGAGGGTGACAGGGTCTCCAAGATAACTCAGCCCAGACGACCTAATCTATCCTCACTGCAAATACCAGCATGGTCCTTAGATATTGCATTGTCTACTTTTGCAAAGACTGATGGTCCTTCAGTTTCACGATCAAGTCCTGGTTCCACTAGAGGACTTCCTCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAACTTCACTTCCTCTGAGGAGCATTAAGACAAATACTTCTTCCCAGGATATTGAAAGGACAGGTCTAATAGTTCCTAAAACTCCCTCATCAGACTCTCCTTTGGATAAACCTTCCAATTCAATTCATCTGTCTCTTATAAGTAAGGTCTTCTCCCCATCAACAAAAGGTGCACACTCATTACCAGTTACTCCATTTGCAACTTCAGCTTCAGAGAAGGCAGATGGAGGACATTTTGTGTGCGATTCTGGTTCAAGTAAAACGGGTGTTCATCGGCATTTGGCTCGATCATTTTCAGTCCCAGCTAATGGCAAAACCACTGGTTTAAGGGTTACTGATTCCAAGGGCTTAATTCGTGTAATTTCAGCAAAGCCACATCTTCAAACTGTTCGTATAAACTCAACTGATGGTGGTTTCGTTCCAGAGATCGCCATTGAAGATGCCACTGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATTTGTTTGGTAGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAGGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTTCAATCGTCAAACTACTGTTAGACAGACATCAAATGTGCCACAGCAGACAGAAGTAGTTTATAACAGGATCTGGCAGGATATACCAGTACTGATCTTGGTCAGCATGCTTGCTTACTTTTGTTTCCTAGAGCAACTACTGGTTTCAGAGTTGGGCCCCCGTGCTCTTGCCATTTCATTACCTTTCGCCTGTGTTTTAGGTTTCCTTTCATCTATGATTGCATCAACTATGGTGAGCAGGAGTTTCGTTTGGGCTTATGCCTGCTTCCAGTTTGCAATTCTTATCCTCTTAGCTCATGTATTTTATACTATTCTCAATTTAAATGCAATTCTCTCGATTCTCCTTTCCTCGTTCATTGGGTTTGGGATTGCAATCGGTATGAATCATCTGGTTATGGAATTTATTGAATGGAGAAAGAGTAGGAGGATTCAATCCTCCATCGAGAATGTAAACATGACAAGGCAGCAGCAGCGTTGA 1539 0.4269 MENRGRSGRIIKLACHELQLAGNNRELTTPKNFAKAFLWMENRGDGADADLQFHADFVPDPSQRCTGNEEGDRVSKITQPRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSTRGLPPRPNSAKVRSSMRTSLPLRSIKTNTSSQDIERTGLIVPKTPSSDSPLDKPSNSIHLSLISKVFSPSTKGAHSLPVTPFATSASEKADGGHFVCDSGSSKTGVHRHLARSFSVPANGKTTGLRVTDSKGLIRVISAKPHLQTVRINSTDGGFVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLKIFNRQTTVRQTSNVPQQTEVVYNRIWQDIPVLILVSMLAYFCFLEQLLVSELGPRALAISLPFACVLGFLSSMIASTMVSRSFVWAYACFQFAILILLAHVFYTILNLNAILSILLSSFIGFGIAIGMNHLVMEFIEWRKSRRIQSSIENVNMTRQQQR* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03894 512 SUPERFAMILY RING/U-box 289 344 - -
Phac8g03894 512 CDD RING_CH-C4HC3_MARCH 293 341 - -
Phac8g03894 512 MobiDBLite consensus disorder prediction 104 137 - -
Phac8g03894 512 MobiDBLite consensus disorder prediction 104 121 - -
Phac8g03894 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 348 IPR013083 -
Phac8g03894 512 SMART ringv_2 292 341 IPR011016 GO:0008270
Phac8g03894 512 ProSiteProfiles Zinc finger RING-CH-type profile. 285 347 IPR011016 GO:0008270
Phac8g03894 512 PANTHER OS02G0165000 PROTEIN 68 505 - -
Phac8g03894 512 Pfam RING-variant domain 293 340 IPR011016 GO:0008270
Phac8g03894 512 MobiDBLite consensus disorder prediction 61 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03894 Phac-Chr8 44817987 44823218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03894 276 397 C3H Transcription Factor Family AT2G37950 35.385 2.32e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03894 - - gmx:100789461 747.658