Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03893 ATGTCACGAGTTGCAGTTGGCGGTTTTGCCAAAGCATTTCTTTGGATGGAAAATAGAGGTGACGGTGCTGATGCTGATCTTCAATTTCACGCTGATTTTGTGCCGGATCCTTCCCAGAGATGTACTGGAAATGAAGAGGGTGACAGGGTCTCCAAGATAACTCAGCCCAGACGACCTAATCTATCCTCACTGCAAATACCAGCATGGTCCTTAGATATTGCATTGTCTACTTTTGCAAAGACTGATGGTCCTTCAGTTTCACGATCAAGTCCTGGTTCCACTAGAGGACTTCCTCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAACTTCACTTCCTCTGAGGAGCATTAAGACAAATACTTCTTCCCAGGATATTGAAAGGACAGGTCTAATAGTTCCTAAAACTCCCTCATCAGACTCTCCTTTGGATAAACCTTCCAATTCAATTCATCTGTCTCTTATAAGTAAGGTCTTCTCCCCATCAACAAAAGGTGCACACTCATTACCAGTTACTCCATTTGCAACTTCAGCTTCAGAGAAGGCAGATGGAGGACATTTTGTGTGCGATTCTGGTTCAAGTAAAACGGGTGTTCATCGGCATTTGGCTCGATCATTTTCAGTCCCAGCTAATGGCAAAACCACTGGTTTAAGGGTTACTGATTCCAAGGGCTTAATTCGTGTAATTTCAGCAAAGCCACATCTTCAAACTGTTCGTATAAACTCAACTGATGGTGGTTTCGTTCCAGAGATCGCCATTGAAGATGCCACTGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATTTGTTTGGTAGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAGGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTTCAATCGTCAAACTACTGTTAGACAGACATCAAATGTGCCACAGCAGACAGAAGTAGTTTATAACAGGATCTGGCAGGATATACCAGTACTGATCTTGGTCAGCATGCTTGCTTACTTTTGTTTCCTAGAGCAACTACTGGTTTCAGAGTTGGGCCCCCGTGCTCTTGCCATTTCATTACCTTTCGCCTGTGTTTTAGGTTTCCTTTCATCTATGATTGCATCAACTATGGTGAGCAGGAGTTTCGTTTGGGCTTATGCCTGCTTCCAGTTTGCAATTCTTATCCTCTTAGCTCATGTATTTTATACTATTCTCAATTTAAATGCAATTCTCTCGATTCTCCTTTCCTCGTTCATTGGGTTTGGGATTGCAATCGGTATGAATCATCTGGTTATGGAATTTATTGAATGGAGAAAGAGTAGGAGGATTCAATCCTCCATCGAGAATGTAAACATGACAAGGCAGCAGCAGCGTTGA 1467 0.4288 MSRVAVGGFAKAFLWMENRGDGADADLQFHADFVPDPSQRCTGNEEGDRVSKITQPRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSTRGLPPRPNSAKVRSSMRTSLPLRSIKTNTSSQDIERTGLIVPKTPSSDSPLDKPSNSIHLSLISKVFSPSTKGAHSLPVTPFATSASEKADGGHFVCDSGSSKTGVHRHLARSFSVPANGKTTGLRVTDSKGLIRVISAKPHLQTVRINSTDGGFVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLKIFNRQTTVRQTSNVPQQTEVVYNRIWQDIPVLILVSMLAYFCFLEQLLVSELGPRALAISLPFACVLGFLSSMIASTMVSRSFVWAYACFQFAILILLAHVFYTILNLNAILSILLSSFIGFGIAIGMNHLVMEFIEWRKSRRIQSSIENVNMTRQQQR* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03893 488 MobiDBLite consensus disorder prediction 80 125 - -
Phac8g03893 488 PANTHER OS02G0165000 PROTEIN 44 481 - -
Phac8g03893 488 CDD RING_CH-C4HC3_MARCH 269 317 - -
Phac8g03893 488 MobiDBLite consensus disorder prediction 105 125 - -
Phac8g03893 488 MobiDBLite consensus disorder prediction 80 97 - -
Phac8g03893 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 324 IPR013083 -
Phac8g03893 488 SUPERFAMILY RING/U-box 265 320 - -
Phac8g03893 488 SMART ringv_2 268 317 IPR011016 GO:0008270
Phac8g03893 488 ProSiteProfiles Zinc finger RING-CH-type profile. 261 323 IPR011016 GO:0008270
Phac8g03893 488 Pfam RING-variant domain 269 316 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03893 Phac-Chr8 44817987 44823218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03893 252 373 C3H Transcription Factor Family AT2G37950 35.385 1.78e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03893 - - gmx:100789461 762.296