Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03892 ATGGAAAATAGAGGTGACGGTGCTGATGCTGATCTTCAATTTCACGCTGATTTTGTGCCGGATCCTTCCCAGAGATGTACTGGAAATGAAGAGGGTGACAGGGTCTCCAAGATAACTCAGCCCAGACGACCTAATCTATCCTCACTGCAAATACCAGCATGGTCCTTAGATATTGCATTGTCTACTTTTGCAAAGACTGATGGTCCTTCAGTTTCACGATCAAGTCCTGGTTCCACTAGAGGACTTCCTCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAACTTCACTTCCTCTGAGGAGCATTAAGACAAATACTTCTTCCCAGGATATTGAAAGGACAGGTCTAATAGTTCCTAAAACTCCCTCATCAGACTCTCCTTTGGATAAACCTTCCAATTCAATTCATCTGTCTCTTATAAGTAAGGTCTTCTCCCCATCAACAAAAGGTGCACACTCATTACCAGTTACTCCATTTGCAACTTCAGCTTCAGAGAAGGCAGATGGAGGACATTTTGTGTGCGATTCTGGTTCAAGTAAAACGGGTGTTCATCGGCATTTGGCTCGATCATTTTCAGTCCCAGCTAATGGCAAAACCACTGGTTTAAGGGTTACTGATTCCAAGGGCTTAATTCGTGTAATTTCAGCAAAGCCACATCTTCAAACTGTTCGTATAAACTCAACTGATGGTGGTTTCGTTCCAGAGATCGCCATTGAAGATGCCACTGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATTTGTTTGGTAGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAGGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTTCAATCGTCAAACTACTGTTAGACAGACATCAAATGTGCCACAGCAGACAGAAGTAGTTTATAACAGGATCTGGCAGGATATACCAGTACTGATCTTGGTCAGCATGCTTGCTTACTTTTGTTTCCTAGAGCAACTACTGGTTTCAGAGTTGGGCCCCCGTGCTCTTGCCATTTCATTACCTTTCGCCTGTGTTTTAGGTTTCCTTTCATCTATGATTGCATCAACTATGGTGAGCAGGAGTTTCGTTTGGGCTTATGCCTGCTTCCAGTTTGCAATTCTTATCCTCTTAGCTCATGTATTTTATACTATTGTAAGAGGATATAACTTCTTGAAGATATTTGGAATTCTGAGAATAAATAAATAA 1311 0.4226 MENRGDGADADLQFHADFVPDPSQRCTGNEEGDRVSKITQPRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSTRGLPPRPNSAKVRSSMRTSLPLRSIKTNTSSQDIERTGLIVPKTPSSDSPLDKPSNSIHLSLISKVFSPSTKGAHSLPVTPFATSASEKADGGHFVCDSGSSKTGVHRHLARSFSVPANGKTTGLRVTDSKGLIRVISAKPHLQTVRINSTDGGFVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLKIFNRQTTVRQTSNVPQQTEVVYNRIWQDIPVLILVSMLAYFCFLEQLLVSELGPRALAISLPFACVLGFLSSMIASTMVSRSFVWAYACFQFAILILLAHVFYTIVRGYNFLKIFGILRINK* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03892 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 309 IPR013083 -
Phac8g03892 436 MobiDBLite consensus disorder prediction 1 47 - -
Phac8g03892 436 Pfam RING-variant domain 254 301 IPR011016 GO:0008270
Phac8g03892 436 SMART ringv_2 253 302 IPR011016 GO:0008270
Phac8g03892 436 ProSiteProfiles Zinc finger RING-CH-type profile. 246 308 IPR011016 GO:0008270
Phac8g03892 436 PANTHER OS02G0165000 PROTEIN 29 427 - -
Phac8g03892 436 SUPERFAMILY RING/U-box 250 305 - -
Phac8g03892 436 CDD RING_CH-C4HC3_MARCH 254 302 - -
Phac8g03892 436 MobiDBLite consensus disorder prediction 65 110 - -
Phac8g03892 436 MobiDBLite consensus disorder prediction 90 110 - -
Phac8g03892 436 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03892 Phac-Chr8 44817987 44823218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03892 237 358 C3H Transcription Factor Family AT2G37950 35.385 1.43e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03892 - - gmx:100789461 671.389