Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03891 ATGGAAAATAGAGGTGACGGTGCTGATGCTGATCTTCAATTTCACGCTGATTTTGTGCCGGATCCTTCCCAGAGATGTACTGGAAATGAAGAGGGTGACAGGGTCTCCAAGATAACTCAGCCCAGACGACCTAATCTATCCTCACTGCAAATACCAGCATGGTCCTTAGATATTGCATTGTCTACTTTTGCAAAGACTGATGGTCCTTCAGTTTCACGATCAAGTCCTGGTTCCACTAGAGGACTTCCTCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAACTTCACTTCCTCTGAGGAGCATTAAGACAAATACTTCTTCCCAGGATATTGAAAGGACAGGTCTAATAGTTCCTAAAACTCCCTCATCAGACTCTCCTTTGGATAAACCTTCCAATTCAATTCATCTGTCTCTTATAAGTAAGGTCTTCTCCCCATCAACAAAAGGTGCACACTCATTACCAGTTACTCCATTTGCAACTTCAGCTTCAGAGAAGGCAGATGGAGGACATTTTGTGTGCGATTCTGGTTCAAGTAAAACGGGTGTTCATCGGCATTTGGCTCGATCATTTTCAGTCCCAGCTAATGGCAAAACCACTGGTTTAAGGGTTACTGATTCCAAGGGCTTAATTCGTGTAATTTCAGCAAAGCCACATCTTCAAACTGTTCGTATAAACTCAACTGATGGTGGTTTCGTTCCAGAGATCGCCATTGAAGATGCCACTGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATTTGTTTGGTAGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAGGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTTCAATCGTCAAACTACTGTTAGACAGACATCAAATGTGCCACAGCAGACAGAAGTAGTTTATAACAGGATCTGGCAGGATATACCAGTACTGATCTTGGTCAGCATGCTTGCTTACTTTTGTTTCCTAGAGCAACTACTGGTTTCAGAGTTGGGCCCCCGTGCTCTTGCCATTTCATTACCTTTCGCCTGTGTTTTAGGTTTCCTTTCATCTATGATTGCATCAACTATGGTGAGCAGGAGTTTCGTTTGGGCTTATGCCTGCTTCCAGTTTGCAATTCTTATCCTCTTAGCTCATGTATTTTATACTATTCTCAATTTAAATGCAATTCTCTCGATTCTCCTTTCCTCGTTCATTGGGTTTGGGATTGCAATCGGTATGAATCATCTGGTTATGGAATTTATTGAATGGAGAAAGAGTAGGAGGATTCAATCCTCCATCGAGAATGTAAACATGACAAGGCAGCAGCAGCGTTGA 1422 0.4276 MENRGDGADADLQFHADFVPDPSQRCTGNEEGDRVSKITQPRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSTRGLPPRPNSAKVRSSMRTSLPLRSIKTNTSSQDIERTGLIVPKTPSSDSPLDKPSNSIHLSLISKVFSPSTKGAHSLPVTPFATSASEKADGGHFVCDSGSSKTGVHRHLARSFSVPANGKTTGLRVTDSKGLIRVISAKPHLQTVRINSTDGGFVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLKIFNRQTTVRQTSNVPQQTEVVYNRIWQDIPVLILVSMLAYFCFLEQLLVSELGPRALAISLPFACVLGFLSSMIASTMVSRSFVWAYACFQFAILILLAHVFYTILNLNAILSILLSSFIGFGIAIGMNHLVMEFIEWRKSRRIQSSIENVNMTRQQQR* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03891 473 MobiDBLite consensus disorder prediction 1 47 - -
Phac8g03891 473 Pfam RING-variant domain 254 301 IPR011016 GO:0008270
Phac8g03891 473 PANTHER OS02G0165000 PROTEIN 29 466 - -
Phac8g03891 473 SMART ringv_2 253 302 IPR011016 GO:0008270
Phac8g03891 473 ProSiteProfiles Zinc finger RING-CH-type profile. 246 308 IPR011016 GO:0008270
Phac8g03891 473 CDD RING_CH-C4HC3_MARCH 254 302 - -
Phac8g03891 473 MobiDBLite consensus disorder prediction 65 110 - -
Phac8g03891 473 MobiDBLite consensus disorder prediction 90 110 - -
Phac8g03891 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 309 IPR013083 -
Phac8g03891 473 MobiDBLite consensus disorder prediction 65 82 - -
Phac8g03891 473 SUPERFAMILY RING/U-box 250 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03891 Phac-Chr8 44817987 44823218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03891 237 358 C3H Transcription Factor Family AT2G37950 36.364 1.70e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03891 - - gmx:100789461 734.947