Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03879 ATGAGGGAGGATTCTGAGTGCGGTGAAGAAGCGGAGAAGAAGCGGAGAAGGTCAACAGTGTCAATGGAAGAGGAGCGTTGGAAGGGGAAGAGACCCTCCGAGCCACGTCCCTGCACGGAGTGCGGCAAGAAGTTCTGGTCTTGGAAGGCACTCTTCGGCCACATGCGCTGCCACCCTGAGCGTCACTGGAGAGGGATCAACCCTCCCCCCAACGCAAGAACACATCAGCAGCAGCAACAGCAGCAAGAGATGAAGATGATAATGACCCAGGAAGACCACGAGGTGGCTGCATGTTTGCTTCTGTTTGCCAATTCCAACAAAGAGAGAGAGAAAGGGAAAGGGAAAGGGAAAGAGAAAGAGAAAGAGGAAGACGATGATGAGTGGCAGAAGAAGGTGAAGGGGTGTTTTGGGAAGATGAGTGGTGATGGGCACAAGTGCAGCATATGCATGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGTCACTGGGAGAATCAGAAAGGGGAGAATCTTCTCCTTCTTCACTCACCTAACTCCTCCATCGACTTGAACTCTCCTCCTCTCACTCTCGATTTGAGGTTGGGACTCTAG 603 0.5274 MREDSECGEEAEKKRRRSTVSMEEERWKGKRPSEPRPCTECGKKFWSWKALFGHMRCHPERHWRGINPPPNARTHQQQQQQQEMKMIMTQEDHEVAACLLLFANSNKEREKGKGKGKEKEKEEDDDEWQKKVKGCFGKMSGDGHKCSICMRVFSTGQALGGHKRCHWENQKGENLLLLHSPNSSIDLNSPPLTLDLRLGL* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03879 200 Pfam C2H2-type zinc finger 144 168 - -
Phac8g03879 200 Pfam C2H2-type zinc finger 37 60 - -
Phac8g03879 200 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 10 193 - -
Phac8g03879 200 MobiDBLite consensus disorder prediction 1 38 - -
Phac8g03879 200 SUPERFAMILY beta-beta-alpha zinc fingers 35 166 IPR036236 -
Phac8g03879 200 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Phac8g03879 200 MobiDBLite consensus disorder prediction 109 128 - -
Phac8g03879 200 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Phac8g03879 200 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Phac8g03879 200 SMART c2h2final6 36 58 IPR013087 -
Phac8g03879 200 SMART c2h2final6 144 166 IPR013087 -
Phac8g03879 200 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 58 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03879 Phac-Chr8 44765330 44765932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03879 32 200 C2H2 Transcription Factor Family AT4G35280 42.922 2.96e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac8g03879 zf-C2H2_6 5.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03879 - - pvu:PHAVU_008G291700g 367.081