Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03878 ATGGAATATGGTGGGTTTGGGAGCTTGTGGGAGAGTGGTTCAGCATGGGAAGAAGATTCGATCGAGGAGGTGCTGGTGGAAGGGTGCTGGGTGGAAGCGAGTGGAGTTGGGAGTTGCGAGGGTGAGTACATGGGAAGTTCAGAAGCGGAGATGGAGATGGAGGTGATGAGGAAGAGATGGTGGATTGGGCCCAAGGCTAATTCCTCCGTCAAAGAGAGACTGGTGGTGGCTGTGGGCTATATCAGGGAATGCACGAAGAACTCCAACGTGGTGATTCAGGTGTGGGTTCCATTACGGAGTGGGCTTGTGGGTGGGCCTGAGAACCTCAGAAGAAATCATCAAGATGAGTGGGTTTCAGTTGAGATGAACATGAACATGAACGTGAACGTGAACAGCGCAAGGGACGTAAGCCTTCGGTTCTATAGAAGCCAGGAGTACCCTCGTGTTCCTTATTATGTGGACGTACCTGGTTCTTTAGCCCTCCCTGTGTTGGAAAGAGGCACCCACACATGCCTTGGTGTCATCCTCATTCTAATGCCTCCCTGCGACACCATCAACTATTGCCCCCAACTTCTTAACAATAATCTTCTCTGCAATTCTTTCCAGGTATTCGAGGAGGTGTACGAAGCAGCAGTGAATGAGATGGCGGAGGTGATGAAGTGTGTGTGCAGGGCGCAGAATGTGGCATTGGCTCTCACATGGGCTCCTTGTTGCATCCAACAGGGAGGGAAGTGTGGCTATGGCCATTCCACCGAGACTCACTTCTCAACGGTGGAGAGAGCGTGTTTTGTGGGGGAAGCCCAAGCACTTCCCTTCAAGGACGCATGCTCTCAGCATCACCTCTTGCGTGGACAGGGAATCGTAGGCACAGCCTTCACAACCTCCAAGCCCTGCTTCGCCGTCGACATAGCCGCCTTCACCAGAGCCCAATATCCTCTGGCTCACCACGCCAACATCTTTGGCCTCCATGCAGCCGTCGCCATTCCTCTAAGGACCCTCTACACCGACTTCGTCGTCGAGTTCTTCCTTCCCAAGGACTGCCATGACAGGGAACACCAAAACCACTTCCTCAACTCCATATCCCTGCTCCTTCAGCAGTCTTGCCGGAACTTGCATGTTGTCATGGGGGATGAGTTCACGTTGCCGCCGCCGCCGCCACCGCCGCCGCAGCAATATCTTAGCAATAAAGAGGAAATAGTTGTGAGTGAGAAATTGGAATCCCAGTGGCAGGCAGAAGCGTGCGGGTCGTGGATTGCGCACATGATGGAGGCCCAGGCTCAGGAACAGAAGGGGAAAGGAGTGTGCGTGTCGTTGGAATACCTGGAAGAGGCGAAAGAGGAGTTCAAAGTGACAGGCAAGTGCAGGTGGGAGAGTGGCGGCGCTGGTGCTTACGAGGCAGCAGATTTACATGAGCAGCAGGTGTTTGGCGATGAATCTCAGACTCAAACTCAGAGTTTTGGTGGGCGACGTGGCAGAAAGTCCGGCGAGAAGAGGCGTACGAAGGCGGAGAAGACGATCAGTCTGCCAGTTCTGAGACAGTACTTCGCCGGAAGCCTGAAAGATGCGGCAAAGAGCATCGGAGTGTGTCCAACAACTCTGAAAAGGATATGCAGACAGCACGGGATCACGAGGTGGCCTTCGAGGAAGATAAAGAAGGTAGGGCACTCTTTGAAGAAGCTTCAGCTTGTGATCGATTCAGTGCAGGGTGCCGAGGGTGCCATTAAGATCGGTTCATTCTACAACAGTTTTCCAGAGTTGAGCTCTGCCACCTCTCACTCATCCATTCCCAACACCACCACCAACAACTCCTCCTCCTTCTACGGCCATTCTCCACCCTCATCCTCCTCTCCTTCCACCGCCCCTCCTCAACACCAACACTTCTCCCAAACAAGTTGCACGGCTGCACCTCTGAGGGTGAAGGCTAGTTTTGGGGATGAAAAGATCCGTTTCAGCCTGCAACCCAAGTGGGGGTTCAGAGAATTGGAGGTGGAGATTGGAAGGCGTTTCAATGTGAAGGATTTGGGGAAGGTGGTGGTGAAGTATTTGGATGATGAAGGAGAGTGGGTTGTTTTAGCCTGCGATGGTGATCTTGAGGAATGCAAAGACTTGCACACAACCTATGAGAGCCGCACCATTAGACTTGCCCTATTTCAACCTTCTTCTCCTTAA 2169 0.5288 MEYGGFGSLWESGSAWEEDSIEEVLVEGCWVEASGVGSCEGEYMGSSEAEMEMEVMRKRWWIGPKANSSVKERLVVAVGYIRECTKNSNVVIQVWVPLRSGLVGGPENLRRNHQDEWVSVEMNMNMNVNVNSARDVSLRFYRSQEYPRVPYYVDVPGSLALPVLERGTHTCLGVILILMPPCDTINYCPQLLNNNLLCNSFQVFEEVYEAAVNEMAEVMKCVCRAQNVALALTWAPCCIQQGGKCGYGHSTETHFSTVERACFVGEAQALPFKDACSQHHLLRGQGIVGTAFTTSKPCFAVDIAAFTRAQYPLAHHANIFGLHAAVAIPLRTLYTDFVVEFFLPKDCHDREHQNHFLNSISLLLQQSCRNLHVVMGDEFTLPPPPPPPPQQYLSNKEEIVVSEKLESQWQAEACGSWIAHMMEAQAQEQKGKGVCVSLEYLEEAKEEFKVTGKCRWESGGAGAYEAADLHEQQVFGDESQTQTQSFGGRRGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIKIGSFYNSFPELSSATSHSSIPNTTTNNSSSFYGHSPPSSSSPSTAPPQHQHFSQTSCTAAPLRVKASFGDEKIRFSLQPKWGFRELEVEIGRRFNVKDLGKVVVKYLDDEGEWVVLACDGDLEECKDLHTTYESRTIRLALFQPSSP* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03878 722 CDD PB1_NLP 637 718 IPR034891 -
Phac8g03878 722 PANTHER PROTEIN NLP8 54 716 IPR045012 GO:0003700
Phac8g03878 722 Gene3D - 633 718 - -
Phac8g03878 722 MobiDBLite consensus disorder prediction 474 502 - -
Phac8g03878 722 MobiDBLite consensus disorder prediction 590 631 - -
Phac8g03878 722 Pfam RWP-RK domain 506 553 IPR003035 -
Phac8g03878 722 SMART PB1_new 636 719 IPR000270 GO:0005515
Phac8g03878 722 MobiDBLite consensus disorder prediction 474 489 - -
Phac8g03878 722 Pfam PB1 domain 637 718 IPR000270 GO:0005515
Phac8g03878 722 SUPERFAMILY CAD & PB1 domains 631 721 - -
Phac8g03878 722 ProSiteProfiles RWP-RK domain profile. 492 573 IPR003035 -
Phac8g03878 722 ProSiteProfiles PB1 domain profile. 636 719 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03878 Phac-Chr8 44757462 44760221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03878 52 713 NLP Transcription Factor Family AT1G76350 36.412 2.76e-142 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Phac8g03878 PB1 1.2e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03878 - - var:108322742 1164.44