Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03876 ATGGCGGAGGTGATGAAGTGTGTGTGCAGGGCGCAGAATGTGGCATTGGCTCTCACATGGGCTCCTTGTTGCATCCAACAGGGAGGGAAGTGTGGCTATGGCCATTCCACCGAGACTCACTTCTCAACGGTGGAGAGAGCGTGTTTTGTGGGGGAAGCCCAAGCACTTCCCTTCAAGGACGCATGCTCTCAGCATCACCTCTTGCGTGGACAGGGAATCGTAGGCACAGCCTTCACAACCTCCAAGCCCTGCTTCGCCGTCGACATAGCCGCCTTCACCAGAGCCCAATATCCTCTGGCTCACCACGCCAACATCTTTGGCCTCCATGCAGCCGTCGCCATTCCTCTAAGGACCCTCTACACCGACTTCGTCGTCGAGTTCTTCCTTCCCAAGGACTGCCATGACAGGGAACACCAAAACCACTTCCTCAACTCCATATCCCTGCTCCTTCAGCAGTCTTGCCGGAACTTGCATGTTGTCATGGGGGATGAGTTCACGTTGCCGCCGCCGCCGCCACCGCCGCCGCAGCAATATCTTAGCAATAAAGAGGAAATAGTTGTGAGTGAGAAATTGGAATCCCAGTGGCAGGCAGAAGCGTGCGGGTCGTGGATTGCGCACATGATGGAGGCCCAGGCTCAGGAACAGAAGGGGAAAGGAGTGTGCGTGTCGTTGGAATACCTGGAAGAGGCGAAAGAGGAGTTCAAAGTGACAGGCAAGTGCAGGTGGGAGAGTGGCGGCGCTGGTGCTTACGAGGCAGCAGATTTACATGAGCAGCAGGTGTTTGGCGATGAATCTCAGACTCAAACTCAGAGTTTTGGTGGGCGACGTGGCAGAAAGTCCGGCGAGAAGAGGCGTACGAAGGCGGAGAAGACGATCAGTCTGCCAGTTCTGAGACAGTACTTCGCCGGAAGCCTGAAAGATGCGGCAAAGAGCATCGGAGTGTGTCCAACAACTCTGAAAAGGATATGCAGACAGCACGGGATCACGAGGTGGCCTTCGAGGAAGATAAAGAAGGTAGGGCACTCTTTGAAGAAGCTTCAGCTTGTGATCGATTCAGTGCAGGGTGCCGAGGGTGCCATTAAGATCGGTTCATTCTACAACAGTTTTCCAGAGTTGAGCTCTGCCACCTCTCACTCATCCATTCCCAACACCACCACCAACAACTCCTCCTCCTTCTACGGCCATTCTCCACCCTCATCCTCCTCTCCTTCCACCGCCCCTCCTCAACACCAACACTTCTCCCAAACAAGTTGCACGGCTGCACCTCTGAGGGTGAAGGCTAGTTTTGGGGATGAAAAGATCCGTTTCAGCCTGCAACCCAAGTGGGGGTTCAGAGAATTGGAGGTGGAGATTGGAAGGCGTTTCAATGTGAAGGATTTGGGGAAGGTGGTGGTGAAGTATTTGGATGATGAAGGAGAGTGGGTTGTTTTAGCCTGCGATGGTGATCTTGAGGAATGCAAAGACTTGCACACAACCTATGAGAGCCGCACCATTAGACTTGCCCTATTTCAACCTTCTTCTCCTTAA 1527 0.537 MAEVMKCVCRAQNVALALTWAPCCIQQGGKCGYGHSTETHFSTVERACFVGEAQALPFKDACSQHHLLRGQGIVGTAFTTSKPCFAVDIAAFTRAQYPLAHHANIFGLHAAVAIPLRTLYTDFVVEFFLPKDCHDREHQNHFLNSISLLLQQSCRNLHVVMGDEFTLPPPPPPPPQQYLSNKEEIVVSEKLESQWQAEACGSWIAHMMEAQAQEQKGKGVCVSLEYLEEAKEEFKVTGKCRWESGGAGAYEAADLHEQQVFGDESQTQTQSFGGRRGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIKIGSFYNSFPELSSATSHSSIPNTTTNNSSSFYGHSPPSSSSPSTAPPQHQHFSQTSCTAAPLRVKASFGDEKIRFSLQPKWGFRELEVEIGRRFNVKDLGKVVVKYLDDEGEWVVLACDGDLEECKDLHTTYESRTIRLALFQPSSP* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03876 508 MobiDBLite consensus disorder prediction 260 275 - -
Phac8g03876 508 SUPERFAMILY CAD & PB1 domains 416 507 - -
Phac8g03876 508 Gene3D - 419 504 - -
Phac8g03876 508 SMART PB1_new 422 505 IPR000270 GO:0005515
Phac8g03876 508 CDD PB1_NLP 423 504 IPR034891 -
Phac8g03876 508 MobiDBLite consensus disorder prediction 376 417 - -
Phac8g03876 508 Pfam RWP-RK domain 292 339 IPR003035 -
Phac8g03876 508 Pfam PB1 domain 423 504 IPR000270 GO:0005515
Phac8g03876 508 ProSiteProfiles PB1 domain profile. 422 505 IPR000270 GO:0005515
Phac8g03876 508 ProSiteProfiles RWP-RK domain profile. 278 359 IPR003035 -
Phac8g03876 508 PANTHER PROTEIN NLP8 2 502 IPR045012 GO:0003700
Phac8g03876 508 MobiDBLite consensus disorder prediction 260 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03876 Phac-Chr8 44757462 44760221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03876 1 499 NLP Transcription Factor Family AT1G76350 39.626 5.24e-118 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Phac8g03876 PB1 7.4e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03876 - - var:108322742 854.744