LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac8g03842	ATGCACCCTCCACGACAGCAATCACAAGTTGGTGAAGGACTACAAACTTCGCTGTCTCTAGTTTCTTCAGATCCCCGCCTTTCCCTTGAGGAGCATAGATCAAACACTGGCAATCTCCGTGAATCTCCTACTGAAAGTGCCAGTTCTAGGGAAATTTGGCCTATGGCTGCAGCAATAAAAAAGGAGAGTGTTTCTGGTGCGGACAAAATTACTCTTCATGACGTTGCAAGAGAACGAGTTGATGTAGTATATGAAAAAATGCTTCATCTACCTTGCGAATTTCTTGATGAACTGAAAAATGGGCTTCGAGTTATCCTTGAAGGAGGGAATGGCTTCCAGCACAGAGAGGAATTTTTTATTTTGCAGAAACTTGTTCAGAGTAGATCTGATTTAACAACCAAGACATTGGTAAGAACACATCGTGTGCAGCTCGAAATCCTTGTTGCCATAAATACTGGGATTCAGGGATTTTTACATCCTAGCATCAATCTATCTCAGGCTTCATTGATTGAGATATTTCTATATAAGAGATGCAGAAACCTAGCTTGTCGGAGCCAGCTTCCTGCTGAAGATTGTACCTGTGAGACATGCGCCAATGGAAATGGTTTCTGCAATCTTTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAACACATGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACTGATTGTGCCATTCGTGAGCAACTCATTTGTATGGGCCCTGCTACACAGAATGGAACAGGGCCAAGTGAAATGGTTTTTAAGTGTCAAGCATGCAATAGGACTTCAGAACTGCTAGGTTGGGTTAAAGATGTCTTCCAGCATTGTGTAATGTCATGGGATGCAGAGGCCCTGATTAGGGAACTTGATTTTGTCAGTAGGATCTTTCATGGAAGTAAAGACCCACGAGGGAGGAAACTCCATTGGAAGTCTGAGGATCTCAAGGAAAATTTAAGAAGTGGGAAAGTGGAATCTAAGGCAGCATGCAAGGCAATACTGATGGTTTTCAAAGAGCTTGAGCTGGACTCTCAAAAGACCCTGGAAAATGCGGAAAGTGAAAGTGGAAGACTGATTGCTCCACAGGAGGCATGCAATAGAATTTCAGAGGTGGTGCATGAGGCTGTAAGAAATATGGAAATGGTAGCCAATGAGAAGATGAGAATGTTCAAGAAGGCTCGGTTGTCTTTTGATGCTTGTGAACGTGAATTAGCAGAAAAGGCCAGAGAAGCAGGAGAACTGAACATGGATAGGCAAAAAAAGAAGTTAGAGATTGAAGAACTGGAAAGAATTGTGAGGCTTAAAAGTGCAGAGGCTGATATGTTCCAGATGAAGGCTAATGAAGCTAAAAGAGAATCTGAGCGGCTCCAGAGGATTCTTCTTGCCAAGTCAGATAAATCAGAAGAAGAATATACCAGCAATTATTTGAAGCAAAGATTAAGTGAGGCCGAGGCTGAGAAGCAGTATCTGTATGAAAAGATGAAAATGCAGGAGACTTCTCGTTTATCACAAAGCAGTGCTGGTGGTGGTGGTGACCCCTTGATGTTTTCCAAAATCCATGATCTTCTCTATAGTGTTCCTCCCAGTGCAGATGGTCCATCTAATGACTGTCATCCTTTTAGAAAAAACCCATAA	1656	0.4251	MHPPRQQSQVGEGLQTSLSLVSSDPRLSLEEHRSNTGNLRESPTESASSREIWPMAAAIKKESVSGADKITLHDVARERVDVVYEKMLHLPCEFLDELKNGLRVILEGGNGFQHREEFFILQKLVQSRSDLTTKTLVRTHRVQLEILVAINTGIQGFLHPSINLSQASLIEIFLYKRCRNLACRSQLPAEDCTCETCANGNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPATQNGTGPSEMVFKCQACNRTSELLGWVKDVFQHCVMSWDAEALIRELDFVSRIFHGSKDPRGRKLHWKSEDLKENLRSGKVESKAACKAILMVFKELELDSQKTLENAESESGRLIAPQEACNRISEVVHEAVRNMEMVANEKMRMFKKARLSFDACERELAEKAREAGELNMDRQKKKLEIEELERIVRLKSAEADMFQMKANEAKRESERLQRILLAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKMKMQETSRLSQSSAGGGGDPLMFSKIHDLLYSVPPSADGPSNDCHPFRKNP*	552

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac8g03842	551	SMART	PHD_3	208	268	IPR001965	-
	Phac8g03842	551	MobiDBLite	consensus disorder prediction	532	551	-	-
	Phac8g03842	551	MobiDBLite	consensus disorder prediction	1	49	-	-
	Phac8g03842	551	Coils	Coil	418	473	-	-
	Phac8g03842	551	CDD	PHD_OBE1_like	208	267	IPR047578	-
	Phac8g03842	551	PIRSF	UCP025218	58	537	-	-
	Phac8g03842	551	PIRSF	UCP025218	1	64	-	-
	Phac8g03842	551	Pfam	PHD - plant homeodomain finger protein	178	301	IPR032881	-
	Phac8g03842	551	Pfam	Coiled-coil region of Oberon	398	530	IPR032535	-
	Phac8g03842	551	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	433	453	IPR004082	-
	Phac8g03842	551	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	472	494	IPR004082	-
	Phac8g03842	551	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	215	235	IPR004082	-
	Phac8g03842	551	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	86	108	IPR004082	-
	Phac8g03842	551	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	128	143	IPR004082	-
	Phac8g03842	551	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	288	307	IPR004082	-
	Phac8g03842	551	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	143	158	IPR004082	-
	Phac8g03842	551	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	169	190	IPR004082	-
	Phac8g03842	551	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	28	531	IPR004082	-
	Phac8g03842	551	MobiDBLite	consensus disorder prediction	1	24	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac8g03842	Phac-Chr8	44292945	44296617	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac8g03842	178	280	PHD Gene Family	AT5G57380	32.692	3.45e-10	60.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac8g03842	-		-	pvu:PHAVU_008G285600g	1080.47