Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03699 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGGATTTCCTGGGACACTGATGAGGAACGTCTCAGAGAATATTTTGGGAAATATGGAGAGGTAATAGAGGCTGTGATCATGAGAGATCGCACAACAGGTCGCGCTCGCGGTTTCGGTTTTGTTGTCTTTTCGGATCCTGTTGTTGCTGAAAGAGTCATCATGGATAAACACATAATTGATGGCCGCACAGTTGAAGCTAAGAAAGCTGTTCCTAGGGACGATCAGATCACTGTAAACAGACAGCAGACTGGTGGCATCCAAGGATCTCCAGGTCCTGGACGCACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACAGAGAGTGATTTTAAAAAGTACTTTGATCAATTTGGTACAATTACTGATGTTGTTGTAATGTATGATCACAATACCCAGAGGCCGAGAGGTTTTGGCTTCATCACATATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACCTTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCTAAAGAGCTTTCGCCTGGACCTAGCCGGAGCCCATTGGTAGGATATAACTATGGTTTGAATAGGACCAGTAGCTTCCTAAATAGTTATGCTCAGGGTTTCAATATGAGCCCAATTGGAAATTATGGAGTCAAGATGGAAGGTAGGTTTAGTCCACTTACTAGTGCTAGAAGTGGGTTTACCCCATTTGGCTCCAATGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAACCCAAGCTATGGAGGGACTTCTAGTTATGGTGGCAGTCTTGGATATGGTCGGATAAGTCCCTTGTACAATGGCAACCCAAACAGATATACCACTCCTATTGGCAATAACGGTGGAAGTGGGAGAACCGATTCTCTAATGAACTCAGCTTCTAGGAGTGTTTGGGGAAATGGGGGCCTGAACAGTGCTGCCAATAATCCAGCCAGCCCTGGCACTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATCGGAAATAGTGGAGCAAATTGGGGTTCATCAGTTCCAACCCAGGGAGGAGGGGCTGCTTCTGGGTATAGTACTTGGGGTAACACTTATGAAGGTGGGGATAACAGCATTGGTTTAGGAGGTGGAGGGTATGGAAGGAACAGCAGTCCAAGTGTGCCTCAATCCTCAACATTTACTGCACCAACTGCTGGTTATGAAGGATCATATGGGGACTTGTACCGCAGTGGTTCAGTTTACAGTGACTCAACTTGGCAGTCTGCTGCCTCTGAAATGGATGCTTCTGGTTCGTTTGGTTATGGTGGGCTTGGTGGCATAGCTTCAGATGATCCAGTAAAGAGTTCTGAAGGTTTTATTGGAAACTACAATGTAATAAGTAGACAAACTAATAGAGGTAAGATCTTTGGTACATTCTTGATTCCTAAAGAAAATTAG 1467 0.4451 MESDLGKLFIGGISWDTDEERLREYFGKYGEVIEAVIMRDRTTGRARGFGFVVFSDPVVAERVIMDKHIIDGRTVEAKKAVPRDDQITVNRQQTGGIQGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLVGYNYGLNRTSSFLNSYAQGFNMSPIGNYGVKMEGRFSPLTSARSGFTPFGSNGYGMGVNLDSGLNPSYGGTSSYGGSLGYGRISPLYNGNPNRYTTPIGNNGGSGRTDSLMNSASRSVWGNGGLNSAANNPASPGTYLGSGSGAFGVSIGNSGANWGSSVPTQGGGAASGYSTWGNTYEGGDNSIGLGGGGYGRNSSPSVPQSSTFTAPTAGYEGSYGDLYRSGSVYSDSTWQSAASEMDASGSFGYGGLGGIASDDPVKSSEGFIGNYNVISRQTNRGKIFGTFLIPKEN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03699 488 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Phac8g03699 488 FunFam Heterogeneous nuclear ribonucleoprotein 1 104 191 - -
Phac8g03699 488 CDD RRM2_Hrp1p 108 185 - -
Phac8g03699 488 Gene3D - 106 186 IPR012677 -
Phac8g03699 488 SMART rrm1_1 108 180 IPR000504 GO:0003723
Phac8g03699 488 SMART rrm1_1 7 78 IPR000504 GO:0003723
Phac8g03699 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 167 IPR000504 GO:0003723
Phac8g03699 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Phac8g03699 488 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Phac8g03699 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Phac8g03699 488 Gene3D - 6 87 IPR012677 -
Phac8g03699 488 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Phac8g03699 488 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Phac8g03699 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Phac8g03699 488 SUPERFAMILY RNA-binding domain, RBD 106 194 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03699 Phac-Chr8 43503582 43507634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03699 5 181 Eukaryotic Initiation Factors Gene Family AT2G23350 24.022 3.53e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03699 K14411 - gmx:100788515 846.269