Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03698 ATGGCTAACTGGGCATGGTTGGTGGCAGAACAGATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGGATTTCCTGGGACACTGATGAGGAACGTCTCAGAGAATATTTTGGGAAATATGGAGAGGTAATAGAGGCTGTGATCATGAGAGATCGCACAACAGGTCGCGCTCGCGGTTTCGGTTTTGTTGTCTTTTCGGATCCTGTTGTTGCTGAAAGAGTCATCATGGATAAACACATAATTGATGGCCGCACAGTTGAAGCTAAGAAAGCTGTTCCTAGGGACGATCAGATCACTGTAAACAGACAGCAGACTGGTGGCATCCAAGGATCTCCAGGTCCTGGACGCACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACAGAGAGTGATTTTAAAAAGTACTTTGATCAATTTGGTACAATTACTGATGTTGTTGTAATGTATGATCACAATACCCAGAGGCCGAGAGGTTTTGGCTTCATCACATATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACCTTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCTAAAGAGCTTTCGCCTGGACCTAGCCGGAGCCCATTGGTAGGATATAACTATGGTTTGAATAGGACCAGTAGCTTCCTAAATAGTTATGCTCAGGGTTTCAATATGAGCCCAATTGGAAATTATGGAGTCAAGATGGAAGGTAGGTTTAGTCCACTTACTAGTGCTAGAAGTGGGTTTACCCCATTTGGCTCCAATGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAACCCAAGCTATGGAGGGACTTCTAGTTATGGTGGCAGTCTTGGATATGGTCGGATAAGTCCCTTGTACAATGGCAACCCAAACAGATATACCACTCCTATTGGCAATAACGGTGGAAGTGGGAGAACCGATTCTCTAATGAACTCAGCTTCTAGGAGTGTTTGGGGAAATGGGGGCCTGAACAGTGCTGCCAATAATCCAGCCAGCCCTGGCACTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATCGGAAATAGTGGAGCAAATTGGGGTTCATCAGTTCCAACCCAGGGAGGAGGGGCTGCTTCTGGGTATAGTACTTGGGGTAACACTTATGAAGGTGGGGATAACAGCATTGGTTTAGGAGGTGGAGGGTATGGAAGGAACAGCAGTCCAAGTGTGCCTCAATCCTCAACATTTACTGCACCAACTGCTGGTTATGAAGGATCATATGGGGACTTGTACCGCAGTGGTTCAGTTTACAGTGACTCAACTTGGCAGTCTGCTGCCTCTGAAATGGATGCTTCTGGTTCGTTTGGTTATGGTGGGCTTGGTGGCATAGCTTCAGATGATCCAGTAAAGAGTTCTGAAGGTTTTATTGGAAACTACAATGTAATAAGTAGACAAACTAATAGAGGAATTGCTGCGTAG 1473 0.4521 MANWAWLVAEQMESDLGKLFIGGISWDTDEERLREYFGKYGEVIEAVIMRDRTTGRARGFGFVVFSDPVVAERVIMDKHIIDGRTVEAKKAVPRDDQITVNRQQTGGIQGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLVGYNYGLNRTSSFLNSYAQGFNMSPIGNYGVKMEGRFSPLTSARSGFTPFGSNGYGMGVNLDSGLNPSYGGTSSYGGSLGYGRISPLYNGNPNRYTTPIGNNGGSGRTDSLMNSASRSVWGNGGLNSAANNPASPGTYLGSGSGAFGVSIGNSGANWGSSVPTQGGGAASGYSTWGNTYEGGDNSIGLGGGGYGRNSSPSVPQSSTFTAPTAGYEGSYGDLYRSGSVYSDSTWQSAASEMDASGSFGYGGLGGIASDDPVKSSEGFIGNYNVISRQTNRGIAA* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03698 490 FunFam Heterogeneous nuclear ribonucleoprotein 1 115 202 - -
Phac8g03698 490 SMART rrm1_1 119 191 IPR000504 GO:0003723
Phac8g03698 490 SMART rrm1_1 18 89 IPR000504 GO:0003723
Phac8g03698 490 SUPERFAMILY RNA-binding domain, RBD 9 116 IPR035979 GO:0003676
Phac8g03698 490 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 12 485 - -
Phac8g03698 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 178 IPR000504 GO:0003723
Phac8g03698 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 86 IPR000504 GO:0003723
Phac8g03698 490 Gene3D - 17 98 IPR012677 -
Phac8g03698 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 93 IPR000504 GO:0003723
Phac8g03698 490 Gene3D - 117 197 IPR012677 -
Phac8g03698 490 CDD RRM2_Hrp1p 119 196 - -
Phac8g03698 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Phac8g03698 490 FunFam Heterogeneous nuclear ribonucleoprotein 1 16 98 - -
Phac8g03698 490 CDD RRM1_hnRNPA_hnRNPD_like 19 89 - -
Phac8g03698 490 SUPERFAMILY RNA-binding domain, RBD 117 205 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03698 Phac-Chr8 43503582 43506300 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03698 16 192 Eukaryotic Initiation Factors Gene Family AT2G23350 24.022 3.32e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03698 K14411 - gmx:100788515 850.892