Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03696 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGGATTTCCTGGGACACTGATGAGGAACGTCTCAGAGAATATTTTGGGAAATATGGAGAGGTAATAGAGGCTGTGATCATGAGAGATCGCACAACAGGTCGCGCTCGCGGTTTCGGTTTTGTTGTCTTTTCGGATCCTGTTGTTGCTGAAAGAGTCATCATGGATAAACACATAATTGATGGCCGCACAGTTGAAGCTAAGAAAGCTGTTCCTAGGGACGATCAGATCACTGTAAACAGACAGCAGACTGGTGGCATCCAAGGATCTCCAGGTCCTGGACGCACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACAGAGAGTGATTTTAAAAAGTACTTTGATCAATTTGGTACAATTACTGATGTTGTTGTAATGTATGATCACAATACCCAGAGGCCGAGAGGTTTTGGCTTCATCACATATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACCTTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCTAAAGAGCTTTCGCCTGGACCTAGCCGGAGCCCATTGGTAGGATATAACTATGGTTTGAATAGGACCAGTAGCTTCCTAAATAGTTATGCTCAGGGTTTCAATATGAGCCCAATTGGAAATTATGGAGTCAAGATGGAAGGTAGGTTTAGTCCACTTACTAGTGCTAGAAGTGGGTTTACCCCATTTGGCTCCAATGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAACCCAAGCTATGGAGGGACTTCTAGTTATGGTGGCAGTCTTGGATATGGTCGGATAAGTCCCTTGTACAATGGCAACCCAAACAGATATACCACTCCTATTGGCAATAACGGTGGAAGTGGGAGAACCGATTCTCTAATGAACTCAGCTTCTAGGAGTGTTTGGGGAAATGGGGGCCTGAACAGTGCTGCCAATAATCCAGCCAGCCCTGGCACTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATCGGAAATAGTGGAGCAAATTGGGGTTCATCAGTTCCAACCCAGGGAGGAGGGGCTGCTTCTGGGTATAGTACTTGGGGTAACACTTATGAAGGTGGGGATAACAGCATTGGTTTAGGAGGTGGAGGGTATGGAAGGAACAGCAGTCCAAGTGTGCCTCAATCCTCAACATTTACTGCACCAACTGCTGGTTATGAAGGATCATATGGGGACTTGTACCGCAGTGGTTCAGTTTACAGTGACTCAACTTGGCAGTCTGCTGCCTCTGAAATGGATGCTTCTGGTTCGTTTGGTTATGGTGGGCTTGGTGGCATAGCTTCAGATGATCCAGTAAAGAGTTCTGAAGGTTTTATTGGAAACTACAATGTAATAAGTAGACAAACTAATAGAGGAATTGCTGCGTAG 1440 0.45 MESDLGKLFIGGISWDTDEERLREYFGKYGEVIEAVIMRDRTTGRARGFGFVVFSDPVVAERVIMDKHIIDGRTVEAKKAVPRDDQITVNRQQTGGIQGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLVGYNYGLNRTSSFLNSYAQGFNMSPIGNYGVKMEGRFSPLTSARSGFTPFGSNGYGMGVNLDSGLNPSYGGTSSYGGSLGYGRISPLYNGNPNRYTTPIGNNGGSGRTDSLMNSASRSVWGNGGLNSAANNPASPGTYLGSGSGAFGVSIGNSGANWGSSVPTQGGGAASGYSTWGNTYEGGDNSIGLGGGGYGRNSSPSVPQSSTFTAPTAGYEGSYGDLYRSGSVYSDSTWQSAASEMDASGSFGYGGLGGIASDDPVKSSEGFIGNYNVISRQTNRGIAA* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03696 479 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Phac8g03696 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Phac8g03696 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Phac8g03696 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 167 IPR000504 GO:0003723
Phac8g03696 479 SUPERFAMILY RNA-binding domain, RBD 106 194 IPR035979 GO:0003676
Phac8g03696 479 Gene3D - 6 87 IPR012677 -
Phac8g03696 479 CDD RRM2_Hrp1p 108 185 - -
Phac8g03696 479 SMART rrm1_1 108 180 IPR000504 GO:0003723
Phac8g03696 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Phac8g03696 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 104 191 - -
Phac8g03696 479 Gene3D - 106 186 IPR012677 -
Phac8g03696 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Phac8g03696 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Phac8g03696 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Phac8g03696 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03696 Phac-Chr8 43503006 43507634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03696 5 181 Eukaryotic Initiation Factors Gene Family AT2G23350 24.022 3.26e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03696 K14411 - gmx:100788515 850.892