LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac8g03581	ATGAGAAGACCAAAATCGAAGGAGTTTCGGAAGCAACAGAGACTCTCAGAGCAGGAAGAGATAAATCTGTTGAATTCATGGATCCAGTTTCAGCCGCCGGATTCCGGCTCCAACCCAATGTCGTTTCCACATCTGCCCAAAAACTCCCCCATTGGTCGCCTCGAAGACAACACCTACTCGCGCTACGCTGGCGCGTCCCGCTTTGGCCAATTCCCGCTCTCCAAGAAAACCAAGGACGCCTTGCGGGCAGCCAAGTTCGTCGTCATGACTGACATCCAGAGAGCTTCTCTCCCCCACGCTCTCTGTGGCCGAGACATCCTCGGCGCCGCCAAAACTGGCTCCGGTAAAACCCTCGCTTTCATTATCCCTGTGTTGGAGAAGTTGTATAGAGAGAGATGGGGACCTGAAGATGGCGTTGGCAGCATAATCATATCGCCTACAAGGGAATTGGCTGGTCAGATATTTGATGTGTTGAAGGATGTTGGAAAACACCATAATTTTAGTGCTGGCCTTCTCATTGGTGGTCGAAAGGATGTTGACATGGAGAAAGAACGTGTTAATGAGCTCAACATATTGATCTGCACACCTGGTAGACTGCTGCAACACATGGATGAAACTCCCAATTTTGATTGTTCACAAATGCAGGTTTTGGTGCTAGACGAGGCTGATCGCATTCTAGACAGTGGGTTCAAGAAGGAACTAAATGCAATCATTTCTCAACTACCAAAGCGTAGACAAACCTTGCTTTTCTCTGCAACTCAAACAAAGTCAATTCAAGATCTTGCCAGACTAAGTTTGAAGGATCCAGAGTATCTGAGTGTGCATGAAGAATCAGTGACTGCCACACCTTCTCTATTGAAGCAAATTGTGATGATTGTTCCCCTTGATCAGAAATTAGATATGCTGTGGAGTTTCATAAAGACGCATCTACAGTCGAAAATACTTGTCTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAGCTGCACCCTGGCATACCATTGAAGTGTCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGTTCAGTTCTCTTCTCAACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTTGATTGTCCTGAAAATGTAGCTTCTTACATACATAGAGTTGGTCGCACCGCTCGATATAAATCTGATGGAAAGTCAGTTTTATTTCTGTTGCCTTCAGAAATGCAAATGCTTGAAAAGTTAAAAGCTGCAAAGGTTCCAGTGCATTTTAACAAGCCAAGGCCAGAACTACTGCAACCGGTTTCTAGTCTGTTGGCATCTTTACTGGTTAAATACCCAGACCTGCAGCATCGGGCACAGAGGGCGTTCATCACATATATGAGATCCATCCATCTACAAAAGGATAAAGACATATTTGATGTTATGAAACTGCCTGTTAACGAGTATTCAGCATCATTAGGTTTACCAATGACTCCCAAAATCCGTTTTCTTAACCAAAAAATTAAATCTAAAGCTGTGTCAACAAAATCAGTTTTAGTTGAACCAGAAGATTCAAGTAAGGATAATGTCTTGGAGGTTTCAAGAAACAAGATAGACACAGATCCTCTCAAGGATGAAAAAATCGAAAATGATCTTTTTCAGTTAGCAGATGCTGCAAATGAAGACGAAGTGAAGTCTTCTGAAATTGAAGAAATAATACCAGCAACACGTGTATTGAAGAAAAAGAAGCTCAAGATTAATGTACATAGGCCAGTGGGGACCAGGGTTGTCTTTGATGATGAAGGCAACACACTTCCTCCTCTAGCCAGGATAGCTGACACACAAAGTGGCAAAGAAGCTTTGCTGCTTGACCCAGAACAAAAAGCTGAATACTATAGAAGGATGCGCGATGATTTGAAGAAGGCTGACAAGGAAGACAAGGTTGTAGAGCGTCAACGGCTTAGAGAAAAAAGAATAAAGCAGAAGATGAAATGGAAAGCTGGGAATGAAGAAGAGGACGACCAAGATGACATTTCTGGGTCAGAAGAAGACGAAACTGTTAACAGACGGCATAAAAAGAGTAAAGTATACTTCGATAGTGACAGTGACGAGGGTGAAAGAAATGAAATGGCAGGGAATGCACGTACTTTGGAGGAGCAAGAAGCTCTGGCTTTGAAATTGTTAAATTCTATGCACTCATAG	2223	0.4287	MRRPKSKEFRKQQRLSEQEEINLLNSWIQFQPPDSGSNPMSFPHLPKNSPIGRLEDNTYSRYAGASRFGQFPLSKKTKDALRAAKFVVMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKDVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPSLLKQIVMIVPLDQKLDMLWSFIKTHLQSKILVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSDGKSVLFLLPSEMQMLEKLKAAKVPVHFNKPRPELLQPVSSLLASLLVKYPDLQHRAQRAFITYMRSIHLQKDKDIFDVMKLPVNEYSASLGLPMTPKIRFLNQKIKSKAVSTKSVLVEPEDSSKDNVLEVSRNKIDTDPLKDEKIENDLFQLADAANEDEVKSSEIEEIIPATRVLKKKKLKINVHRPVGTRVVFDDEGNTLPPLARIADTQSGKEALLLDPEQKAEYYRRMRDDLKKADKEDKVVERQRLREKRIKQKMKWKAGNEEEDDQDDISGSEEDETVNRRHKKSKVYFDSDSDEGERNEMAGNARTLEEQEALALKLLNSMHS*	741

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac8g03581	740	PANTHER	RNA HELICASE	64	567	-	-
	Phac8g03581	740	MobiDBLite	consensus disorder prediction	667	724	-	-
	Phac8g03581	740	Pfam	DEAD/DEAH box helicase	90	260	IPR011545	GO:0003676\|GO:0005524
	Phac8g03581	740	Pfam	Domain of unknown function (DUF4217)	451	508	IPR025313	-
	Phac8g03581	740	SMART	ultradead3	85	289	IPR014001	-
	Phac8g03581	740	SMART	helicmild6	325	408	IPR001650	-
	Phac8g03581	740	SMART	DUF4217_3	447	510	IPR025313	-
	Phac8g03581	740	Gene3D	-	283	528	IPR027417	-
	Phac8g03581	740	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	218	226	IPR000629	-
	Phac8g03581	740	Pfam	Helicase conserved C-terminal domain	298	407	IPR001650	-
	Phac8g03581	740	CDD	DEADc_DDX10	77	275	-	-
	Phac8g03581	740	Gene3D	-	52	278	IPR027417	-
	Phac8g03581	740	MobiDBLite	consensus disorder prediction	689	721	-	-
	Phac8g03581	740	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	138	427	IPR027417	-
	Phac8g03581	740	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	66	94	IPR014014	GO:0003724
	Phac8g03581	740	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	294	456	IPR001650	-
	Phac8g03581	740	CDD	SF2_C_DEAD	286	417	-	-
	Phac8g03581	740	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	97	272	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac8g03581	Phac-Chr8	42930521	42935962	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac8g03581	93	429	Eukaryotic Initiation Factors Gene Family	AT3G19760	29.825	2.50e-36	140

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac8g03581	K14776		-	gmx:100792106	1343.18