Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03563 ATGCCCTCAGCCTATAAATGCTACTCTATCTGCATCATTCCCAAGCAAAATACATTTAGAGCATTCTTATCCCCTCACTTTGAAATGCCCACATCTCTCACTATCACCAACTGGTTTTCTGAAATGGTAGAAACAGTAGCTGCAAGGTTTAACCAACTTCGCAGTGGCGGTTCTGTAGTTGGGCTATTCATGAAGGTTGTGGAGAGAGTTGTTTTTGCTTTATTTACTTGCATTCTGGCACTTGGTGGGTCAATAGTCGGAACAATTGCAGGAGGCATAAAGGGGCAGACCACAGAAACTGGTTTTCTTGATGGGGCTGGCAAAGGAGCAATCACAGGAGCCATTGCAGCATTGGAATTGATAAATTTTGATGCTGTTGATGAGCCATTGTCCAAGTTTGCCCTGTTGAGAAGTTTGTTAAATGGGAAAGTCTTTATGGAATGGATATGTCCAGCTGTGGCAAAACTCTATCAGTTGCATGTTACAATCAACACACTGGAAACAATTTACCAAGAAGTATCAGACATTTATGATATCAGGGGAGTAAGAGGGGTACCCCAGAATGTAATTATGAAGCTTCCTTTTCAGCCTTTCAACTCTAGCAAAATCTCCAAATCATACAACATGTCTTGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGGAGAATTGGTGAGGGTACTTCCAAAATGTGGCCACCTTTTTCACCTAGAATGCATAGACAAATGGCTAGTCCAACAAGGATCATGCCCAATGTGCAGAACTTATGTTCCAGACCACATTCTTAAATAA 792 0.4167 MPSAYKCYSICIIPKQNTFRAFLSPHFEMPTSLTITNWFSEMVETVAARFNQLRSGGSVVGLFMKVVERVVFALFTCILALGGSIVGTIAGGIKGQTTETGFLDGAGKGAITGAIAALELINFDAVDEPLSKFALLRSLLNGKVFMEWICPAVAKLYQLHVTINTLETIYQEVSDIYDIRGVRGVPQNVIMKLPFQPFNSSKISKSYNMSCCSICFQDFEDGELVRVLPKCGHLFHLECIDKWLVQQGSCPMCRTYVPDHILK* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03563 263 CDD RING-H2_EL5-like 211 254 - -
Phac8g03563 263 SUPERFAMILY RING/U-box 197 258 - -
Phac8g03563 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 260 IPR013083 -
Phac8g03563 263 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 61 255 IPR044523 -
Phac8g03563 263 ProSiteProfiles Zinc finger RING-type profile. 212 254 IPR001841 -
Phac8g03563 263 Pfam Ring finger domain 212 254 IPR001841 -
Phac8g03563 263 SMART ring_2 212 253 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03563 Phac-Chr8 42882105 42884070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03563 73 257 C3H Transcription Factor Family AT5G66070 36.598 1.58e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03563 - K19041 gmx:100305612 388.267