Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac8g03536 | ATGGTCCAACCAAGTAATGTAACTCCCCTATCATCCACCCCATTTTCTTCTTCTGATGACAACCCCTTTGATGATGTTATCGATTCTTCCTCTCATTCAAAACCATCATCATCATCATCAAAGAGGACACGCGGTAGGCCTGCAGGCTCCAAGAACAAACCAAAATTAACCCTTGTGATTAACCAAAACAATGAGCGTGCCGAAAAACCTATATTCATTCAAATCCCTAAAAACTTTGATGTAATTGAGACACTGACCCAATTTGCCCGTGATTACCAAACTAGCATCACGGTGCAAACTGCATCAGGATCTATTCTAAACGCCACTCTCCGCGACAGTGAATCTGAAAATTCTACTTTCATTGTTCATGGGCCCTTTACTTTAGTTTCCCTCAGTGGCACTTGCATAAATAACAACTTTTGTAGTGCTTCATTATCATCTAATCTTGACCTTGGTTGTTTCTTTAACATTTCTTTATGTTCAAATTTAGGTCAAAGTTTTATTGGGGTTGTTGGAGGGAAGATTTCATATTCATTCTCCTTAACAATGGTTCAACCAAGTAATGTGACTCCCCTATCATCCACCCCACTTTCTTCCTCTGATGATAACACATTTGATGATGCTATCGATTTTTCCTCTCATTCAAAACCATCACCATCATCAAAGAGAACACGCGGTAGGCCTGCAGGCTCCAAGAACAAACAAAAATTAACCTTTGTGATTAACCAAAACAGTGAGCATGCCAAAAAACCTATACTCATTCAAATTCCTAGAAACTCTGATGTAATTGAGACACTAACCCAATTCGCCCGTGATTACCAAACTAGCATCACGGTGCAAACCGCATCAGGATCTATCCTAAACGTCACTCTCCGCGACAACAATGAATATGAAATTTCTACTTTCATTGTTCATGGACCCTTTACTTTAGTTTCCCTCAGTGGCACTTGCATAAATAACAACTCTAGTACTACATTATCATCTAATCTTGACTGTTTTTTTAACATTTGTTTTTGTTCAAACATAGATCAAAGCTTTATGGGAGTTGTTGGAGGGAAGGTTATTGCTGGTGATGATGTTGTTGTGACTGCTACTATTTTCAAGAACTCTTAG | 1113 | 0.3881 | MVQPSNVTPLSSTPFSSSDDNPFDDVIDSSSHSKPSSSSSKRTRGRPAGSKNKPKLTLVINQNNERAEKPIFIQIPKNFDVIETLTQFARDYQTSITVQTASGSILNATLRDSESENSTFIVHGPFTLVSLSGTCINNNFCSASLSSNLDLGCFFNISLCSNLGQSFIGVVGGKISYSFSLTMVQPSNVTPLSSTPLSSSDDNTFDDAIDFSSHSKPSPSSKRTRGRPAGSKNKQKLTFVINQNSEHAKKPILIQIPRNSDVIETLTQFARDYQTSITVQTASGSILNVTLRDNNEYEISTFIVHGPFTLVSLSGTCINNNSSTTLSSNLDCFFNICFCSNIDQSFMGVVGGKVIAGDDVVVTATIFKNS* | 371 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac8g03536 | 370 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 250 | 368 | IPR005175 | - | |
| Phac8g03536 | 370 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 69 | 176 | IPR005175 | - | |
| Phac8g03536 | 370 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 250 | 361 | - | - | |
| Phac8g03536 | 370 | CDD | DUF296 | 69 | 175 | IPR005175 | - | |
| Phac8g03536 | 370 | ProSiteProfiles | PPC domain profile profile. | 246 | 370 | IPR005175 | - | |
| Phac8g03536 | 370 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 25 | 178 | IPR014476 | GO:0003680 | |
| Phac8g03536 | 370 | MobiDBLite | consensus disorder prediction | 208 | 226 | - | - | |
| Phac8g03536 | 370 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 69 | 161 | - | - | |
| Phac8g03536 | 370 | ProSiteProfiles | PPC domain profile profile. | 65 | 195 | IPR005175 | - | |
| Phac8g03536 | 370 | SMART | AT_hook_2 | 222 | 234 | IPR017956 | GO:0003677 | |
| Phac8g03536 | 370 | SMART | AT_hook_2 | 41 | 53 | IPR017956 | GO:0003677 | |
| Phac8g03536 | 370 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Phac8g03536 | 370 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Phac8g03536 | 370 | MobiDBLite | consensus disorder prediction | 208 | 235 | - | - | |
| Phac8g03536 | 370 | CDD | DUF296 | 250 | 363 | IPR005175 | - | |
| Phac8g03536 | 370 | Gene3D | - | 69 | 202 | - | - | |
| Phac8g03536 | 370 | Gene3D | - | 250 | 369 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac8g03536 | Phac-Chr8 | 42723651 | 42728415 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac8g03536 | 222 | 369 | AT-hook Motif Nuclear Localized (AHL) Family | AT5G49700 | 34.228 | 5.41e-23 | 95.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac8g03536 | - | - | var:108336502 | 243.432 |