Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03516 ATGGATATCATGTCAATAGGAGAAAGTCATGGTGGTAATGGCTTTCAAATTTATGGTTGTGATGTTATGAACCCTGCTTTCACATCCACAGACACAAATGAATTCTTATGTGCCCACTTCCTTCATCAACAACAAGCAAGGAACAGTGATGATTGTGCTTTTTCTGAGGAGGCTTTTAAGTGGACAAACATCAACCACAACCTTAAATTGTGCCTGGAAGACATGCAGGTTTCATGCAAGAACACAAAAGTGGTGGGAAGGAGAAGGAAGAAACAATCTTCTGTGTCTTGGATCAAAGGACAATGGAACAAAGAAGAGGACAGAAAACTAATAAGGTTGGTGAAACAGCATGGTGATAGAAAATGGGCTGAAATAGCTGAGAATTTGGAGGGAAGAGTTGGCAAACAGTGTCGAGAAAGATGGAATAATCATTTGCGTCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGGATACTAGTAGAGATGCATGCGAGCCTTGGAAATCGTTGGTGCGAGATGGCAAAACGCCTTGCAGGAAGATCAGAGAATGCCATAAAGAACCACTGGAATGCCACCAAAAGGAGACTCAATTCAAAGAGAAAGCACAAGAAAACCAAAAATGGAAAACCACATTCCTCCATTCTTGAAGACTACATCAGAAGCAAGACTCTCATCACCACAAACCCTACACCTCTCATCATCACTGCCCCACAGGACAATGCACCTAACCCTTTAAACCATGTCTTCCATCAACCTTTTGCCAACGATTTACTCTTCATGCAACAAATTTGCATGGAGAATGTTGATGCCTCTAAGCACCCCAAGATGTCTCCAACCTCATATTTGGATTGCTGGAACATGAATGTTGATGATATGGATGAGAGTGAGTTCTTGTATTCTCAGCAATTCCCTGATAATATGCAGTTGAATGATGATAGTCTCTTCCCTAGAGAGACTCATCCTCCAGGTAACTACCTTCCTTCGGATCTATATGTATCTCCCTTCGGATATGGAAATCAGAATCTGAACATAGATTTTCGGCATCAAGGTTGCTCACAAGTGAAAGGAGATGAGATTTGGTAG 1092 0.4139 MDIMSIGESHGGNGFQIYGCDVMNPAFTSTDTNEFLCAHFLHQQQARNSDDCAFSEEAFKWTNINHNLKLCLEDMQVSCKNTKVVGRRRKKQSSVSWIKGQWNKEEDRKLIRLVKQHGDRKWAEIAENLEGRVGKQCRERWNNHLRPDIKKDSWSEEEERILVEMHASLGNRWCEMAKRLAGRSENAIKNHWNATKRRLNSKRKHKKTKNGKPHSSILEDYIRSKTLITTNPTPLIITAPQDNAPNPLNHVFHQPFANDLLFMQQICMENVDASKHPKMSPTSYLDCWNMNVDDMDESEFLYSQQFPDNMQLNDDSLFPRETHPPGNYLPSDLYVSPFGYGNQNLNIDFRHQGCSQVKGDEIW* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03516 363 Pfam Myb-like DNA-binding domain 102 159 - -
Phac8g03516 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 149 IPR017930 -
Phac8g03516 363 ProSiteProfiles Myb-like domain profile. 99 145 IPR001005 -
Phac8g03516 363 SMART sant 150 198 IPR001005 -
Phac8g03516 363 SMART sant 98 147 IPR001005 -
Phac8g03516 363 CDD SANT 102 145 IPR001005 -
Phac8g03516 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 150 200 IPR017930 -
Phac8g03516 363 Gene3D - 153 217 - -
Phac8g03516 363 ProSiteProfiles Myb-like domain profile. 146 196 IPR001005 -
Phac8g03516 363 SUPERFAMILY Homeodomain-like 96 192 IPR009057 -
Phac8g03516 363 Gene3D - 98 150 - -
Phac8g03516 363 FunFam Transcriptional activator Myb isoform A 98 151 - -
Phac8g03516 363 PANTHER MYB PROTEIN-RELATED 90 212 - -
Phac8g03516 363 CDD SANT 153 196 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03516 Phac-Chr8 42603735 42607266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03516 90 341 MYB Transcription Factor Family AT5G11050 43.214 5.08e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phac8g03516 Myb_DNA-bind_6 3.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03516 K09422 - gmx:102668713 483.411