Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03490 ATGTGCGGTGTTTCCAAGGGGAAACCTTCTCAAATTGGTTTGGTGATGGAGGAAGAGTGTGGAAAAGAAGGGATGCATCATAGAATTTCTGCTTTGCTTGAGTTTTCTGCTGCAGATGATCTAATTGGCTTCAAAGAGGCGGTTGAAAAGGAGGGTCTTGATGTTGATGGGGTGGGGTTGTGGTATGGAAGGCGTGCTGGCTCAAAGAGAATAAGTTATGAAGAGAGGACTGCTCTCATGGTTGCTTCTACGTTTGGAAGCCTTGATGTGTCAGCTTATATTCTTGGAACGGGTCGTGTTGATGTTAGCCGGGCCAGTAGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCTGTTGAGATTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTAGTGCTGTTGATGCTGATGGTAACAGGCCAATTGACTTGATTGTTTCTGTGGCTAATTCTATTTTCAGTCCAAGGGCCAGGGTGCTACAGGCCCTCCTGGAGGGTACCTGTGATGCTGCTGATCAGACATGTTTCTCACTTCCACAAGTGATTGACCAAATTGAGGAACAAAGGCAAGAAACGACCACACCCCGTGTTTCCAAAGATTATCCCATTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATGGCACTGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCCAGGGCCTATTCTCATGACTGGACCGAGTGCCCCTTTGTTCATCCAGGGGAGAACGCAAGGCGACGTGATCCAAGGAAGTACCATTACAGCTGTGTCCCTTGTCCTGAGTTTCGCAAGGGATCTTGCAGCAAAGGGGATGCCTGTGAGTATGCTCATGGTATATTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACCAGGCTCTGCAAGGATGAGAGTGGATGCACAAGGAGAGTTTGCTTTTTTGCACACAAGGCGGAGGAGCTTCGTCCCCTGTATGCTTCTACAGGTTCTGCTATTCCTTCTCCAAGGTCCTATTCTGTTAGTGCTTCTGCATTGGAGATGGGTTCAGTTAGCCCAATTGCACTTGGTTCTCCATCAATCTTGATACCACCTGCCTCAAAACCACCTTTGACTCCATCTGGGGCATCTTCTCCGGTTAGTGGTTCCATTTGGTCTCAATCTAATGTTGCAGTCCCCACCCTGCAGCTGCCCAAAAGCAGATTGAAGGCTGCATCAGCTGCAAGAGACATTGATTTGGATTTTGAACTGCTTGGACTTGAAGCTCATAGGCGTAGACAACAGCTAATGATGGATGAGATGTCTGGTCTTTCCTCTCCCACCAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTTCGTGTTTCTCTGAGTGATCACATTGGGGAGTTAAATAGGCTTTCAGGGGACCTCAGTTACAATCTCCAACTGGAATCCAAATGCGTTCGAACATGA 1473 0.4745 MCGVSKGKPSQIGLVMEEECGKEGMHHRISALLEFSAADDLIGFKEAVEKEGLDVDGVGLWYGRRAGSKRISYEERTALMVASTFGSLDVSAYILGTGRVDVSRASRSDGATALHCAVAGGSAASVEIVKLLLDASADVSAVDADGNRPIDLIVSVANSIFSPRARVLQALLEGTCDAADQTCFSLPQVIDQIEEQRQETTTPRVSKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKAEELRPLYASTGSAIPSPRSYSVSASALEMGSVSPIALGSPSILIPPASKPPLTPSGASSPVSGSIWSQSNVAVPTLQLPKSRLKAASAARDIDLDFELLGLEAHRRRQQLMMDEMSGLSSPTNWKNSMPNSPSFRVSLSDHIGELNRLSGDLSYNLQLESKCVRT* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03490 490 Gene3D - 268 330 - -
Phac8g03490 490 SMART ANK_2a 74 104 IPR002110 GO:0005515
Phac8g03490 490 SMART ANK_2a 109 141 IPR002110 GO:0005515
Phac8g03490 490 SUPERFAMILY Ankyrin repeat 71 158 IPR036770 -
Phac8g03490 490 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Phac8g03490 490 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Phac8g03490 490 PANTHER UNKEMPT FAMILY MEMBER 34 429 IPR045234 -
Phac8g03490 490 FunFam Zinc finger CCCH domain-containing protein 66 225 293 - -
Phac8g03490 490 Pfam Ankyrin repeats (3 copies) 70 142 IPR002110 GO:0005515
Phac8g03490 490 ProSiteProfiles Zinc finger C3H1-type profile. 272 294 IPR000571 GO:0046872
Phac8g03490 490 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 292 IPR000571 GO:0046872
Phac8g03490 490 Gene3D - 30 182 IPR036770 -
Phac8g03490 490 SMART c3hfinal6 267 293 IPR000571 GO:0046872
Phac8g03490 490 SMART c3hfinal6 302 325 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03490 Phac-Chr8 42455578 42458897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03490 1 417 C2H2 Transcription Factor Family AT5G12850 47.722 5.69e-133 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac8g03490 Ank_2 7.7e-07 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g03490 8 42455578 42458897 Phac8g03490 8 42455578 42458897 ECH